Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1487 ATGAGAAAGAAAAGGCCTAGGATGAAAATAAAGGAAGATCAAGGGCAGTGTTCTTCATCTTCTCAGGCCATGAATAACATTCAGAACTATCAAGAACAGCTTCTTCTTCATCAAATGATGCAGCAGCAGCAGCAGCAAAACGCTGACGTTTTCGGAGGCAATTCTTCTAATAATACTAACAACGAGAGAGGATTGATGTTCCCTGAGGTTTCTCCAATCTTTCATCCGCCGCCGCCTCCACAGTCGCCATGGTCTCTCCCTCCTGTTCACTCGTTCAACCCGGTCCGAGGAGACGCTGGCGACCACCAGTTTTTGGTCCCTCCAGTACCTTCTTCCTCCTCTTCGCTCTACGCGGGCCTCTTCAACCGGAGGGTTCCTTCTCCGCAGTTCGCTTACGATGGTCCGTCCAATTCCGATCACCACCACCATCTCCGGATCATCTCGGACACCCTCGGGGTCGGACCAGCTGTCGTGGGTCAACCCGGCTCAGCAGCTCCATTCGGCCTCCAAGCCGAGCTGGGAAGGATGACGGCTCAAGAAATCACAGACGCCAAAGCTCTCGCGGCTTCAAAGAGCCACAGCGAAGCCGAGAGAAGACGCCGAGAGAGAATCAACAACCACCTCGCCAAGCTTCGAAGCTTATTGCCCAACACAACCAAAACAGACAAAGCTTCGTTATTAGCAGAAGTAATCCAGCATGTGAAGGAGCTGAAGCGTCAAACTTCAATAATAGCAGAAACAAGCCCAGTGCCGACGGAAACCGACGAGTTGACGGTGGACGACGCTTCCGATGAGGACGGCAGGTTCGTGATCAAAGCCTCGCTTTGCTGCGAAGACAGGTCCGATCTCTTGCCGGACCTCATCAAGACGTTGAAGGCCCTAAGATTGAGAACCGTCAAGGCGGAGATCACCACGCTCGGTGGACGCGTTAAGAACGTCTTGTTCATCACCGGCGAAGAAGATGAGTTGAATAATGGCGGCGGCGGGCGCGGCGGTGAGGAGCAGAGACAGCATCAGCATTGTATAAGCTCCATACAAGAGGCTTTGAAGGCAGTGATGGAGAAGAATGGTGGTGGTGGTGAGAATGGGAATGTTAAGAGGCAAAGAACTAATAATAATATCAATATCCTTGAATAA 1137 0.5172 MRKKRPRMKIKEDQGQCSSSSQAMNNIQNYQEQLLLHQMMQQQQQQNADVFGGNSSNNTNNERGLMFPEVSPIFHPPPPPQSPWSLPPVHSFNPVRGDAGDHQFLVPPVPSSSSSLYAGLFNRRVPSPQFAYDGPSNSDHHHHLRIISDTLGVGPAVVGQPGSAAPFGLQAELGRMTAQEITDAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSIIAETSPVPTETDELTVDDASDEDGRFVIKASLCCEDRSDLLPDLIKTLKALRLRTVKAEITTLGGRVKNVLFITGEEDELNNGGGGRGGEEQRQHQHCISSIQEALKAVMEKNGGGGENGNVKRQRTNNNINILE 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1487 378 CDD bHLH_AtAIG1_like 183 260 - -
Lele50g1487 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 188 237 IPR011598 GO:0046983
Lele50g1487 378 SMART finulus 194 243 IPR011598 GO:0046983
Lele50g1487 378 PANTHER TRANSCRIPTION FACTOR BHLH30 43 375 IPR045847 GO:0003700|GO:0006355
Lele50g1487 378 MobiDBLite consensus disorder prediction 356 378 - -
Lele50g1487 378 MobiDBLite consensus disorder prediction 1 22 - -
Lele50g1487 378 Gene3D - 183 244 IPR036638 GO:0046983
Lele50g1487 378 FunFam transcription factor bHLH30 183 246 - -
Lele50g1487 378 MobiDBLite consensus disorder prediction 363 378 - -
Lele50g1487 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 192 244 IPR036638 GO:0046983
Lele50g1487 378 Pfam Helix-loop-helix DNA-binding domain 191 237 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1487 Lele-ChrLele50 19979443 19983091 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1487 20 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.878 4.10e-109 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele50g1487 HLH 2.7e-12 No_clan