Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1478 ATGATGCCCTTTCATGAGCAAGAAACTACCACAGTTGCTACTGTCATCCCCAACACGCAGATTCAGACCGTCATCAACCGGCCGGAGAACGGTTCCGTACACGCCGAGCCACCAGGTTTGGCCACTCACGACCGAGAACCTGGTCTGGAAACTTCCTTTTCCGTCCGTGATCACCACCCGACAACAACGAGAGTTTCAGCACTACACCAATCCTTGCGTCCCGTTACCCTCAAATTTGAAGACTTCTCTTACAGTGTAACAATCGAAAGCAAGAAAAATGGTTGTGTCTGTGTTTCTTCTCAAAAGCCGAAGCTGACGAGGACGATACTCAACGGCGTGACGGGGATTGTACGGCCCGGTGAGCTGATGGCAATGCTGGGTCCGTCCGGCAGCGGGAAGACAACACTGCTCACTGCCCTCGCTGGCCGGCTCGCCGGGAAAGTCTCCGGCTCTATAACATACAACGGCCAACCCTTCTCTAGCTCCATGAAGCGCAAAACCGGGTTCGTGACACAAGATGACGTTCTCTATCCTCATCTCACAGTCCTTGAGACGCTCACTTTTGCTGCTTTGCTAAGACTTCCCAAGAGTCTCACCAGAAAGGAGAAAATGGAGCAGGCTGAGACCGTCATGGAGGAGCTCGGGCTAACGAGGTGCCGCAACAGCCCCATCGGAGGCGGAACCAGCTTGGTTCGGGGCATTTCGGGCGGAGAACGAAAGCGGGTCAGTATTGGGCAGGAGATGCTGGTGAACCCGAGTCTGTTGTTGCTGGACGAGCCGACATCAGGGCTGGACTCGACGACGGCCCAACGCATCGTCATGATGCTCAGGGGACTGGCGCGCCGTGGCCGGACGGTGGTGACGACGATTCATCAGCCTTCGAGCCGGTTGTATAGAATGTTTGACAAGCTAGTTGTGTTATCGGACGGGTATCCGTTTTACAGTGGCAAAGCCGGTCAGGTAATGGAGTATCTTGGGTCCATTGGATTTGTTCCCGCTTTCAACTTTGTGAACCCGGCGGATTTTCTACTTGACTTGGCTAATGGCATAGTTGCTGATGTGAAACATGATGATCAAAGTGATTTCCATGATGCATTAGAGCAACATGAGGATCAAGCTTCAGTCAAACAGTCTCTAGTTTCATCCTACAATAAGATTTTATATCCCCCTCTGAAACAAGAGATTCAGCAAAGTAATAGAGACCTAGCTGCTCACACATCAGGAACACCAAGAAGTTCAGAGAATCAATGGAACACAAGCTGGTGGGAGCAGTTCAGGGTGCTTCTGAAGAGAGGTTTAAAAGAGAGGAGACATGAATCTTATTCAGGTTTAAGGATTTTCCAAGTCCTCTCTATCTCTCTTCTCTCTGGATTTCTTTGGTGGCATTCTGATCCCTCAAACATACAAGATCAGGTGGGCCTGCTATTCTTCTTCTCAATCTTCTGGGGATTCTTCCCTCTCTTCAATGCAATATTAGCATTCCCATTAGAGAGACCAATGCTATCAAAAGAGAGATCATCAGGAATGTACCATCTCTCCTCATACTACATAGCCAGAATGATTGGAGACTTACCAATGGAACTTATTCTTCCCACAATCTTCCTAACAATCACATATTTCATGGGAGGCCTCAAGCCTTCAATTCTCACATTCCTCTTAACCCTTATGATAATTCTCTTCAATGTTCTCGTGTCCCAAGGCATTGGCCTTGCACTTGGGGCAATCCTAATGGATGTGAAACAAACAACAACTTTGGCTTCTGTTACCATGCTTGTGTTTTTGTTAGCTGGTGGTTATTACATTCAGAAGATGCCTTCTTTCATAGCTTGGTTGAAGTACTTCTCATTCAGTCACTATTGTTATGAGCTTCTGGTGGGAGTTCAGTACTCAAAGGATCAAGTTTATGAATGTGGTGAAGGGCTGCATTGTAGGGTTGTGGATTTTCCTGCTATTAAGTGTTTGGATATTGGGAATTTGTGGGGTGATGTGGCTGCTTTGGCTGTTATGTTTGTTGGATACAGAATTATGGCTTATTTAGCTTTGAGGATGAGGCAGCCTTTCTGA 2064 0.4777 MMPFHEQETTTVATVIPNTQIQTVINRPENGSVHAEPPGLATHDREPGLETSFSVRDHHPTTTRVSALHQSLRPVTLKFEDFSYSVTIESKKNGCVCVSSQKPKLTRTILNGVTGIVRPGELMAMLGPSGSGKTTLLTALAGRLAGKVSGSITYNGQPFSSSMKRKTGFVTQDDVLYPHLTVLETLTFAALLRLPKSLTRKEKMEQAETVMEELGLTRCRNSPIGGGTSLVRGISGGERKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQRIVMMLRGLARRGRTVVTTIHQPSSRLYRMFDKLVVLSDGYPFYSGKAGQVMEYLGSIGFVPAFNFVNPADFLLDLANGIVADVKHDDQSDFHDALEQHEDQASVKQSLVSSYNKILYPPLKQEIQQSNRDLAAHTSGTPRSSENQWNTSWWEQFRVLLKRGLKERRHESYSGLRIFQVLSISLLSGFLWWHSDPSNIQDQVGLLFFFSIFWGFFPLFNAILAFPLERPMLSKERSSGMYHLSSYYIARMIGDLPMELILPTIFLTITYFMGGLKPSILTFLLTLMIILFNVLVSQGIGLALGAILMDVKQTTTLASVTMLVFLLAGGYYIQKMPSFIAWLKYFSFSHYCYELLVGVQYSKDQVYECGEGLHCRVVDFPAIKCLDIGNLWGDVAALAVMFVGYRIMAYLALRMRQPF 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1478 687 Pfam ABC-2 type transporter 291 355 IPR043926 GO:0140359
Lele50g1478 687 Pfam ABC-2 type transporter 423 629 IPR013525 GO:0016020|GO:0140359
Lele50g1478 687 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 77 334 IPR003439 GO:0005524
Lele50g1478 687 Gene3D - 96 328 IPR027417 -
Lele50g1478 687 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 62 678 - -
Lele50g1478 687 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 107 328 IPR027417 -
Lele50g1478 687 ProSitePatterns ABC transporters family signature. 234 248 IPR017871 GO:0005524|GO:0016887
Lele50g1478 687 MobiDBLite consensus disorder prediction 27 46 - -
Lele50g1478 687 FunFam ABC transporter G family member 22 97 328 - -
Lele50g1478 687 SMART AAA_5 119 312 IPR003593 -
Lele50g1478 687 Pfam ABC transporter 110 262 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1478 Lele-ChrLele50 19850362 19854964 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1478 53 310 Calmodulin-binding Proteins AT2G36910 30.112 4.72e-15 77.4