Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1469 ATGTCGGTGGCGTCACCCTCTCCGGCGGCAGCCACCGCCCCACCACCACCAACACCAATATCCTCCACCAATAGTAGTGCGCCACCGCCCTCCACCACTCCGCCACCACAATCCTCTTCACTCACTCCACCAGGCAATTCCACTTCGCCGTCGCCTTCGCCACCTCCGCCATCCCCAACCCCTTCCACGCAGTCGCCACCTTCGGTGATTCCGTCAGCACCTCCTCCTGCTGTGCCATCGCCTCCACCAGTACAGTCAAAGCCACGGCCACCTCAGGCATCAACACCCCCTCCGTCTGTCACTCCACCTCCATTATCTCCTCCTCCTTCACAATCTGATGCACCTGCGTCACAACCACCACCTCCGCCTAATGCTACTCCGCCTACTTCTCCTGTACTTTCCCCACCACCGCCACGACAATCACCAGCTCCACCGGTGAGTTCTCCTCCGCCTGCAAATTCATCCCAACCACCATCTAACCCATCTCCGGTGCCTTCGCCGCCTGCACCATCGGCAAATCCGCCAAGAAACTCCTCTCCACCTCCTACACAATCGTCAAACCCTCCGGAAAACTCACCTCCACCACCGACATCAAGCCCCCCGGGAAATTCATCTTCACCGTCATCATCTGTGTCACCACCGAATACTTCACCACCTCCGCCTGTGGCTGTGCCACCCCGAGGGTCATCTCCACCACCAGCATCAGCACCGCCTGTAAATTTACCTGCCCCTGCGGCACCTAGTTCTCAACCAAGTCCACCTCCTTCAAATTCCACCCCACACTCATCTCCTCCGAACCCCATTATTCGAATGGCTCCACCTCCGTCCTCACTTTTGACACCTCCAGCTTCTCAAAATTCCTCTCCACCATCAGAAAGTGGAACGGAAAGTTCAAACCCTAGGACAAAGAGTGGCATAGATACTGGTGTTGCAGCGGCTATTGGTGTAGCAGGGGGAATTATAGTGCTTACCTTGATTGGAATTCTTGCCTGGTGCCTGATAAGGAGGAAAAAGAAACGGGGGCCTGAGAGTGGTAGTTATGTCATGCCATCCACTTCTGGTTCACTACCCGAGTCAGATTCATCCTTTTTTAAGACACATTCTTCAGCTCCTCTTGTACAAAGCGGTTCTGGTAGTGACACTGTGTACACTCCATCTGAGCCGGGTGGACTAGGCAACTCAAGGACATGGTTTACATACGAAGAACTAGTCAAAGCTACAAATGGTTTTGCGCCTCAAAATCTTTTGGGTGAGGGTGGATTTGGTTCTGTATATAAAGGATACCTACCAGATGGGAGAGAGATAGCAGTCAAACAGCTGAAAATTGAAGGGGGTCAGGGCGAAAGAGAATTCAAAGCTGAAGTGGAGATTATTAGTCGCATTCATCATCGACATTTGGTTACTTTGGTGGGATACTGCATTTTGGATAGCAGAAGGCTGCTCGTCTATGATTATGTCCCCAACAAAACCCTCTATCATCATCTTCATGGGGAAGGTGTGCCAGTGTTGAGCTGGGAAAAACGTGTGAAGATTGCTGCTGGTGCAGCTCGAGGAATTGCTTATCTCCATGAAGATTGCAATCCTCGGATCATTCACAGGGATATCAAGTCCTCAAACATTCTTTTAGATTACAACTTTGATGCTCAAGTCTCAGATTTTGGGCTAGCCAAATTAACCCTTGATACAGTTTCACACATAAGCACTCGTGTCATGGGAACATTTGGATATGTTGCACCTGAATATGCATCAAGTGGCAGATTGACTGAGAAATCTGATGTATTTTCTTTTGGGGTTGTACTTCTGGAGCTCATTACTGGACGGAAGCCTGTAGATGCATCTCAACCCTTGGGGGATGAGAGCCTAGTTGAATGGGCTCGACCTCTGCTGAGTCATGCAATTGATAATGAGGAATTTGAAGGTTTAACAGATCCTAGGCTTGAAAAGAACTATGTTGAAAGTGAGATGTTTCGCATGATTGAAATTGCTGCAACTTGTGTGCGACATTCGGCTACCAAGAGACCTCGAATGGGACAGGTTGTGAGAGCTTTTGAGACCATAATAAATTCAGATTTAAACAACGGGATGAGACCAGGGGAAAGCGAGGCATTTAACTCTGCACAGCAATCTGCAGAAATAAGAATGTTTCGGAGGATGGCATTTGGTAGCCAAGATTACAGCACAGACTTTTTTAGTCAGACAAGTTTGAATTCAACATAG 2217 0.4944 MSVASPSPAAATAPPPPTPISSTNSSAPPPSTTPPPQSSSLTPPGNSTSPSPSPPPPSPTPSTQSPPSVIPSAPPPAVPSPPPVQSKPRPPQASTPPPSVTPPPLSPPPSQSDAPASQPPPPPNATPPTSPVLSPPPPRQSPAPPVSSPPPANSSQPPSNPSPVPSPPAPSANPPRNSSPPPTQSSNPPENSPPPPTSSPPGNSSSPSSSVSPPNTSPPPPVAVPPRGSSPPPASAPPVNLPAPAAPSSQPSPPPSNSTPHSSPPNPIIRMAPPPSSLLTPPASQNSSPPSESGTESSNPRTKSGIDTGVAAAIGVAGGIIVLTLIGILAWCLIRRKKKRGPESGSYVMPSTSGSLPESDSSFFKTHSSAPLVQSGSGSDTVYTPSEPGGLGNSRTWFTYEELVKATNGFAPQNLLGEGGFGSVYKGYLPDGREIAVKQLKIEGGQGEREFKAEVEIISRIHHRHLVTLVGYCILDSRRLLVYDYVPNKTLYHHLHGEGVPVLSWEKRVKIAAGAARGIAYLHEDCNPRIIHRDIKSSNILLDYNFDAQVSDFGLAKLTLDTVSHISTRVMGTFGYVAPEYASSGRLTEKSDVFSFGVVLLELITGRKPVDASQPLGDESLVEWARPLLSHAIDNEEFEGLTDPRLEKNYVESEMFRMIEIAATCVRHSATKRPRMGQVVRAFETIINSDLNNGMRPGESEAFNSAQQSAEIRMFRRMAFGSQDYSTDFFSQTSLNST 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1469 738 MobiDBLite consensus disorder prediction 281 304 - -
Lele50g1469 738 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 317 718 - -
Lele50g1469 738 CDD TM_EGFR-like 309 340 - -
Lele50g1469 738 SUPERFAMILY Protein kinase-like (PK-like) 389 683 IPR011009 -
Lele50g1469 738 ProSitePatterns Protein kinases ATP-binding region signature. 416 438 IPR017441 GO:0005524
Lele50g1469 738 MobiDBLite consensus disorder prediction 1 304 - -
Lele50g1469 738 MobiDBLite consensus disorder prediction 341 387 - -
Lele50g1469 738 Gene3D Phosphorylase Kinase; domain 1 387 485 - -
Lele50g1469 738 SMART serkin_6 410 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1469 738 Gene3D Transferase(Phosphotransferase) domain 1 486 705 - -
Lele50g1469 738 Pfam Protein kinase domain 413 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1469 738 MobiDBLite consensus disorder prediction 346 387 - -
Lele50g1469 738 ProSiteProfiles Protein kinase domain profile. 410 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1469 738 CDD STKc_IRAK 416 686 - -
Lele50g1469 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 530 542 IPR008271 GO:0004672|GO:0006468
Lele50g1469 738 MobiDBLite consensus disorder prediction 212 280 - -
Lele50g1469 738 FunFam Proline-rich receptor-like protein kinase PERK8 382 485 - -
Lele50g1469 738 FunFam proline-rich receptor-like protein kinase PERK8 486 697 - -
Lele50g1469 738 MobiDBLite consensus disorder prediction 9 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1469 Lele-ChrLele50 19741448 19746134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1469 198 734 Trihelix Transcription Factor Family AT1G70460 49.215 7.20e-171 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lele50g1469 Pkinase 1.2e-43 CL0016