Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1468 ATGTTTGGTGGGGATGATGGCAAAGAAGGGAGTGGGGTTGTTTCATATTTAGATGCTGGTCGTGTTGGAAGAGAATTTGGTGATAGTAATAATGATTTCCTCAAGTTTTCCCATGATTTGGCTCCTAATAATGGCAGATCAAAGGGGGGAGGAGGAAGAAGAGGAGGCAAAAGGGTTAGACAGGTCACTATTGAGAAGAAAAGGAGAGTGGACTTTACCAGCAAATTTGACGCCTTAAAAGAACTCATCCCAAATCCCACCAAGAATGATAGAGCATCTCTGCTTTGTGGTGCTATTGAGTACATCCAAGAGCTTCGTAGATCAGTTAACAATTTCACATTATTAGTTAATAAAAAGAGATCGAGTGGGAAAGAAAGGATGATGAAGAGGCACAAGGTTGAGGAAGAAGAAGGAGAAGATAAAGAAGAAGCTTTAGGGGGCTTGGAGAGCTGCAACTTGAAGCCGCTCAGTGAAGAACCAGATCATCATCATCAACAACAACAACTTCTTCTTCCAATCAATAGATGCATAATTAGGACCACTTGGCTTCAGAAGAAATCTGAAGACACAGAGGTTGATGTCCGAATCGTTGATGACCAAGTGACAATCAAGCTTGTGCAGAGAAAGAACACTAACTGCTTGCTGTTTGCTTCCAAGGCTCTGGATGAACTTGAGCTTGATCTCCAACATGTTGCTGGTGGCCACATTGGCGATTTCTGCAGTTTTCTGTTCAACAGCAAGATATATGAAGTTCCTGCCGAAAATGATGACCAATCCCTCAGTTCGTTGCGCCTCGCCTTTCCATTCTCAGTCGTTGCAGCAATCTCGCTTCGCGCTTGCCTTCTTCAATCTCTCCATATCGACGAAATCTATTTTCTTCGGCGAAACACCGACCCCAAGACATGTCTCTGTACGGTCTCAGACATCCGGTCCGGATCATGGGGTGCTGAATCAATTGCTGACCACATGTATTGCATGGCTATAATGACTTTGATTGCTGCTGATGTGCCTGGATTGAACAGAAAAAGATGTATTAAAATAGCACTAGTGCATGATATTGCTGAAGATTATTCCCTTACTCTGTCTGGTACACATGAAGTTTTTAAACATATTTCCTCTAATGTATTGCCTTCTCCAATGCAACAACAGATGGCTTTAACGAGATGTGCTTATGAAGGATGTGTTCATCTTTTGTAA 1197 0.4252 MFGGDDGKEGSGVVSYLDAGRVGREFGDSNNDFLKFSHDLAPNNGRSKGGGGRRGGKRVRQVTIEKKRRVDFTSKFDALKELIPNPTKNDRASLLCGAIEYIQELRRSVNNFTLLVNKKRSSGKERMMKRHKVEEEEGEDKEEALGGLESCNLKPLSEEPDHHHQQQQLLLPINRCIIRTTWLQKKSEDTEVDVRIVDDQVTIKLVQRKNTNCLLFASKALDELELDLQHVAGGHIGDFCSFLFNSKIYEVPAENDDQSLSSLRLAFPFSVVAAISLRACLLQSLHIDEIYFLRRNTDPKTCLCTVSDIRSGSWGAESIADHMYCMAIMTLIAADVPGLNRKRCIKIALVHDIAEDYSLTLSGTHEVFKHISSNVLPSPMQQQMALTRCAYEGCVHLL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1468 398 PANTHER TRANSCRIPTION FACTOR BHLH91 31 250 IPR045895 GO:0006355|GO:0048658
Lele50g1468 398 Gene3D - 53 113 IPR036638 GO:0046983
Lele50g1468 398 SMART finulus 62 111 IPR011598 GO:0046983
Lele50g1468 398 Gene3D Hypothetical protein af1432 300 358 - -
Lele50g1468 398 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 113 IPR036638 GO:0046983
Lele50g1468 398 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 56 105 IPR011598 GO:0046983
Lele50g1468 398 MobiDBLite consensus disorder prediction 121 138 - -
Lele50g1468 398 MobiDBLite consensus disorder prediction 37 58 - -
Lele50g1468 398 Pfam Helix-loop-helix DNA-binding domain 57 105 IPR011598 GO:0046983
Lele50g1468 398 MobiDBLite consensus disorder prediction 121 144 - -
Lele50g1468 398 SUPERFAMILY HD-domain/PDEase-like 311 363 - -
Lele50g1468 398 Pfam HD domain 312 355 IPR006674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1468 Lele-ChrLele50 19721502 19729308 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1468 43 250 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31220 49.519 5.58e-50 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele50g1468 HD_3 3.5e-11 CL0237