Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lele50g1467 | ATGGCTAGTCTGGCAGTAATCACCAGATTTCCCGTTCAACTATTGAGCATGCTCTTCAACTTCCTCAAGCTAGCTTATAGAGCTTTCAAATGGTTCTTAGACTTCCTTCTCTACCACCCATTTTACAGCCTTCATGTTCATCATCATCATCAACAACCTCTTCATCATGAATTTCAGATGGTTACAGAAGATCGAGTCGAAATATGGCGTCCTCGTCGTCGTGAAGGAGGAGGAGAAGAAGAAGTGGATTGTGTTGTGTGTCTAAGCAAGATTGGTGAAGGAGAAGAAGTTAGAGTGCTGAGGTGTGAACATGTTTTTCATAGAGATTGTTTGAATCAATGGGTTGAATTTAGGAACTATACTTGTCCTCTTTGTGGGGACTTTCTGGGTTGTGGGATTAGGAGTGTCGTTCATGGTTGGGGAGGAACAACCGATGAGATTTTCTTTAGGTTTTCTTCTTCTTCTTGGTAA | 471 | 0.4183 | MASLAVITRFPVQLLSMLFNFLKLAYRAFKWFLDFLLYHPFYSLHVHHHHQQPLHHEFQMVTEDRVEIWRPRRREGGGEEEVDCVVCLSKIGEGEEVRVLRCEHVFHRDCLNQWVEFRNYTCPLCGDFLGCGIRSVVHGWGGTTDEIFFRFSSSSW | 156 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lele50g1467 | 156 | ProSiteProfiles | Zinc finger RING-type profile. | 84 | 125 | IPR001841 | - | |
| Lele50g1467 | 156 | PANTHER | - | 17 | 125 | - | - | |
| Lele50g1467 | 156 | Pfam | Ring finger domain | 83 | 125 | IPR001841 | - | |
| Lele50g1467 | 156 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 128 | IPR013083 | - | |
| Lele50g1467 | 156 | SUPERFAMILY | RING/U-box | 78 | 129 | - | - | |
| Lele50g1467 | 156 | SMART | ring_2 | 84 | 125 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lele50g1467 | Lele-ChrLele50 | 19718346 | 19718816 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lele50g1467 | 83 | 125 | C3H Transcription Factor Family | AT1G15100 | 67.442 | 3.29e-15 | 67.0 |