Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1448 ATGCAAAAAGAAGGTTTTTCTTTCTCTATTTTAGCTTTCTTCCTCATCATCATCTTCTTCTGCACTTCTTCAGTATCTGGTTTGCTTTCTCCCAAAGGTATCAACAATGAAGTGCAAGCTCTTATAGGAATTAAAAGTTCTTTAAAGGATCCTAACAATGCCCTTCATAACTGGGATATGTATGAAGTTGAGCCTTGTAACTGGGCTTTTGTATCTTGCGCTCCTGACGATAGTTCTGTGAATACCCTGCAATTTCCAAGCCAAAACTTTTCTGGTTCTCTTTCCCCCAGCATTAGCAACTTAACCAATCTCAGGACTCTGACCCTACAAGGGAATAATATATCAGGAACAATTCCTTCTGATATTGGGATGCTGCAAAAGCTTCAGACTCTTGATCTTTCTCATAATTCTTTCACTGGTCAACTTCCAGAGAGTCTCTCCCACATGAAGAGTCTCAATTATCTGAGACTAAACAATAATAGTCTCACAGGACCAATACCTTCCACTTTGGCTAACATGACCCAGCTTGCTATTATGGATATATCTTATAATAACTTGAGTGGACCTCTACCTACAATAAATGCAAAAACATTCAACATTGTAGGAAATCCCCAGATTTGTGCCACTGGAACTGACCAACATTGCTTCAGAACAACGCAACTTTCAACTAATTTTAGTAACTCTCAAGGTTCAGCAGCCACCAGTAAACCAAAGAATCACAAACTTATGTTGGCAATTGCTTTAACAGTAAGCTGTGTCTGCATACTAACTCTGGTGTTCGGCTTCCTCTGGTGGAGACAAAGATCAAGCAAACAAGTTTTCTTCGACATCAATGAACAAATGCGAGAAGATGTGCGGCTTGGAAACTTGAGAAAGTTCCACATAAGAGAACTCGAGGTTGCCACGAACAAGTTCAGCAGCAAGAACCTGATTGGCAAAGGAGGATATGGGAACGTGTACAAAGGCTATCTTTCAGATGGTGGGGTCATAGCAGTGAAAAGGGTTAGAGATGGAAGTGCCATTACAGGGGAGACTCAGTTTCAGACTGAAGTGGAGATTATAAGCCTTGCTGTACATCGCAACTTGCTTCGTCTCTATGGATGCTGCATCACTCCTACAGAGAGACTCCTCGTTTATCCCTTCATGTCCAATGGTAGTGTTGCTTCTCGTCTCAAAGTGAAGCCTGCTTTAGAGTGGAGCACAAGGAAGAGGATAGCTTTGGGAGCCGCAAGAGGGTTGGCATACCTACATGAGCAGTGTGATCCCAAGATTATTCATAGGGATGTGAAGGCCGCAAATATATTGCTCGATGAGTGCTGTGAAGCTGTGGTTGGGGATTTTGGGTTAGCTAAACTGTTAGATCACAAGGACTCTCATGTGACTACAGCAGTTCGAGGCACTGTAGGCCATATAGCACCAGAGTACCTCTCAACAGGCCAATCTTCTGATAAAACTGATGTCTTTGGCTTTGGGATTCTTGTCCTTGAACTCATCTCTGGCCGCACGGCTCTTGAATTTGGAAAAGCAGCTAACCAGAAAGGAGCCATGCTTGATTGGGTGAAGAAAATGCATCTAGAGAAGAAACTTAACTTGTTGATTGACAAGGAACTAAGAAACAACTATGACATAATTGAGCTTGAAGAAATGGTTAGAATAGCACTCCTATGTACCCAGTACCTTCCAGCTCATAGACCCAGAATGTCTGAAGTGGTTAGAATGCTTGAAGGAGATGGGCTTGCAGAGAAATGGGAAGCTTCAAAGGGAGCTGAATCAACAAGGAGCAGAGCAAGCGAGCCATCTTCTTCAGAACGCTACTCTGATCTCACTGACGACTCTACACTGTTTAATCAGGCCATTGAGCTTTCTGGTCCAAGGAGCAACATAGTAGCTCCTCAAAGTCAGATACTAAGCATCTCTCTGTAA 1923 0.4275 MQKEGFSFSILAFFLIIIFFCTSSVSGLLSPKGINNEVQALIGIKSSLKDPNNALHNWDMYEVEPCNWAFVSCAPDDSSVNTLQFPSQNFSGSLSPSISNLTNLRTLTLQGNNISGTIPSDIGMLQKLQTLDLSHNSFTGQLPESLSHMKSLNYLRLNNNSLTGPIPSTLANMTQLAIMDISYNNLSGPLPTINAKTFNIVGNPQICATGTDQHCFRTTQLSTNFSNSQGSAATSKPKNHKLMLAIALTVSCVCILTLVFGFLWWRQRSSKQVFFDINEQMREDVRLGNLRKFHIRELEVATNKFSSKNLIGKGGYGNVYKGYLSDGGVIAVKRVRDGSAITGETQFQTEVEIISLAVHRNLLRLYGCCITPTERLLVYPFMSNGSVASRLKVKPALEWSTRKRIALGAARGLAYLHEQCDPKIIHRDVKAANILLDECCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSDKTDVFGFGILVLELISGRTALEFGKAANQKGAMLDWVKKMHLEKKLNLLIDKELRNNYDIIELEEMVRIALLCTQYLPAHRPRMSEVVRMLEGDGLAEKWEASKGAESTRSRASEPSSSERYSDLTDDSTLFNQAIELSGPRSNIVAPQSQILSISL 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1448 640 ProSiteProfiles Protein kinase domain profile. 305 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1448 640 FunFam Somatic embryogenesis receptor kinase 1 33 217 - -
Lele50g1448 640 Gene3D Ribonuclease Inhibitor 34 217 IPR032675 -
Lele50g1448 640 FunFam Somatic embryogenesis receptor-like kinase 1 382 594 - -
Lele50g1448 640 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Lele50g1448 640 SUPERFAMILY L domain-like 35 200 - -
Lele50g1448 640 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Lele50g1448 640 Pfam Leucine rich repeat 102 162 IPR001611 GO:0005515
Lele50g1448 640 MobiDBLite consensus disorder prediction 585 609 - -
Lele50g1448 640 SUPERFAMILY Protein kinase-like (PK-like) 290 577 IPR011009 -
Lele50g1448 640 SMART serkin_6 305 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1448 640 MobiDBLite consensus disorder prediction 592 609 - -
Lele50g1448 640 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 14 585 - -
Lele50g1448 640 Gene3D Transferase(Phosphotransferase) domain 1 382 594 - -
Lele50g1448 640 Pfam Leucine rich repeat N-terminal domain 35 73 IPR013210 -
Lele50g1448 640 Pfam Protein kinase domain 306 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1448 640 FunFam Somatic embryogenesis receptor kinase 1 274 381 - -
Lele50g1448 640 Gene3D Phosphorylase Kinase; domain 1 274 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1448 Lele-ChrLele50 19406190 19411518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1448 12 625 Receptor kinase-like Gene Family AT5G16000 66.294 0.0 843
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Lele50g1448 Pkinase 6.1e-43 CL0016