Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1414 ATGGTAAATGAAACGGTGGAAAATACTCTCTCCAATCTAGAGGAGATTGATGAAGCTGCGTATGGTTTAGAAATCCCCGACCCCAAAGAAGACAAGAGGAAGAAGTCTAAACATATAGCAGATTTAAAGAAACAGAAGCTAAGTGAAGTAGAGGGTGCCTGTAATGATAAGGTTGGGGTAACTTTTGAAGAAAACAAGGATGAGAGTGTGATGACTGTAAAGGAAAAGAAGAAGAAGGAAGCTTCTGATCAAGTTATTAATGTGAAAGATGATAATGATGAGGAGGACATTGATGAAATGGAATTTTATGCATGGAATGAATTGAGACTTCATCCTCTGCTCATTAAACCAATTTGCAAGCTTGGGTTCAAGGAGCCAACGCCAATGCAGAAAGCTTGTATTCCAGCTGCTGCTCATCAAGGGAAGGATGTTGTTGGGGCTTCTGAGACTGGATCTGGGAAAACTCTTGCTTTTGGTTTACCCATTTTGCAACGCCTTTTAGAGGAGATGGAGAAGGCTGCAGAGATGGTTGAACAGAGGGGCGAAGAACCTGACAAATATGCTCCTACTGGCCCTCTAAGGGCTCTAATAATTGCTTCAACTAGGGAACTTTTACTTCAGGTCACTGATCGTCTGAAAGCAGCAGCCAAATATATCAATGTTAGAGTGACTCCAATAGTTGGGGGCATTTTAGCAGGAAAACAGGAGATACTCTTAAAAGCAAAGCCTGAGATTGTTGTTGGGACGCCAGGGAGGTTATGGGAACTTATGTCATCTGGAGAAAAGCATCTAGTGGAGAACTGTGGATATCCTCCTGGGAAAAATTGCTATGCTGTCCCGATAAACTTCCCTTGTAGTCTTCCTTCTCCTTTCCTCCTCTCTGCCTTTGCCGCCCCCCACCCAAAAACCATATTGCCTGGTGGGGATGATCCTCAATCTGCACAAAATTGCATTACAATTTCAAGCTACCAAAGAAAGAAAAGCAAACTCTAG 993 0.428 MVNETVENTLSNLEEIDEAAYGLEIPDPKEDKRKKSKHIADLKKQKLSEVEGACNDKVGVTFEENKDESVMTVKEKKKKEASDQVINVKDDNDEEDIDEMEFYAWNELRLHPLLIKPICKLGFKEPTPMQKACIPAAAHQGKDVVGASETGSGKTLAFGLPILQRLLEEMEKAAEMVEQRGEEPDKYAPTGPLRALIIASTRELLLQVTDRLKAAAKYINVRVTPIVGGILAGKQEILLKAKPEIVVGTPGRLWELMSSGEKHLVENCGYPPGKNCYAVPINFPCSLPSPFLLSAFAAPHPKTILPGGDDPQSAQNCITISSYQRKKSKL 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1414 330 PANTHER RNA HELICASE 72 262 - -
Lele50g1414 330 Pfam DEAD/DEAH box helicase 127 261 IPR011545 GO:0003676|GO:0005524
Lele50g1414 330 SMART ultradead3 122 321 IPR014001 -
Lele50g1414 330 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 100 262 IPR027417 -
Lele50g1414 330 Coils Coil 160 183 - -
Lele50g1414 330 MobiDBLite consensus disorder prediction 22 36 - -
Lele50g1414 330 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 135 253 IPR014001 -
Lele50g1414 330 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 103 131 IPR014014 GO:0003724
Lele50g1414 330 Gene3D - 61 270 IPR027417 -
Lele50g1414 330 MobiDBLite consensus disorder prediction 1 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1414 Lele-ChrLele50 18805275 18810137 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1414 104 256 Eukaryotic Initiation Factors Gene Family AT5G11200 32.903 6.62e-15 73.6