Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1412 ATGTATATACACATAAGTTTTGCTCCCTGTTATCAAGTTATTAATGTGGAAGATGATAATGATGAAGAGGACATTGATGAAATGGAATTTTATGCGTGGAATGAGTTGAGACTTCATCCTCTGCTCATGAAAGCAATTTGCAAGCTTGGTTTCAAGGAGCCCACGCCAATACAGAAAGCTTGTATTCCAGCTGCTTCTCATCAAGGGAAGGATGTTGTTGGGGCTTCTGAGACTGGATCTGGGAAAACTCTTGCTTTTGGTTTACCCATTTTGCAACGCCTTTTAGAGGAGAGGGAGAAGGCTACAAAGATGGTTGAACAAAGGGGTGAAGAACCTGACAAATATGCTCCTACTGGCCTTCTAAGGGCTCTAATAATTGCTCCAACTAGGGAACTGGCACTTCAGGTCACGGATCATCTGAAAGCAGTAGCCAAATATATCAATGTTAGAGTGACTCCTATAGTTGGGGGCATTTTAGCAGAAAAACAGGAGAGACTCTTAAAAGCAAGGCCTGAGATTGTTGTTGGGACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAGCATCTAGTTGAGTTACATTCCTTGTCATTCTTTGTGCTTGATGAGGCTGATCGAATGATACAAAGTGGTCATTTTAAAGAGTTGCAATCAATAATTGACATGCTCCCCATGTCCAACACGCCTGGTGGGGATGATCCTCAATCTGCACAAAATTGCATTACAATTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTAGTTTTTTCGGCAACTGTTGCACTATCTGCTGATTTTCGCAAGAAGCTGAAGCGCGCTTCAACAAAACAAAATCAATCAGTGTTAGATGGATTTAATTCCATTGAAGCCCTGTCTGAACGTGCAGGAATGAGACCCAATACTGCAGTGATTGATCTCACCAATCCAACAATATTGGCAGCCAAGCTTGAAGAGTCATTTATTGAATGCAAAGAAGAAGACAAAGATGCTTATCTGTACTATATTTTGACCGTCCATAGGCAAGGCCGCACAATAGTATTCTGTACATCAATTGCAGCTTTGCGCCATATCTCTTCTCTACTTCGCATTCTTGGCACTAATGCTTGGACTCTTCATGCCCAAATGCAGCAGCGAGCACGTTTAAAGGCCATGGATCGCTTTCGTGAAGATGAAAATGGCATACTTGTTGCTACAGATGTTGCAGCTAGGGGTCTGGATATTCCTGACGTTAGAGCAGTTGTCCACTATCAGCTTCCACATTCTGCAGATGTTTATGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCTGAAGGGTGCAGCATTGCTTTAATCTCACCAAAAGATACAACAAAGTTTGCTTCGTTGTGCAAGTCCTTCTCCAAGGACACTTTTCAGCGATTTCCTTTAGAGAATTCATACATGCCAGAAGTTCTTAAGCGATTGTCTATTGCCCGTCAAATAGACAAAATAGCACGAAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGCGGAGTGCTGAATCAGTGGAGTTAGTTGTGGAAAATTATGACAGTGAGGAGGAAAGAGTGAAGAAATATAGGCAAATGAAAGCCAGCTCTACTCAGTTGAAGAAGTTGCAGCAGGCGGGGATCACACCGCTGATGCAGGAACAATTCCAACAATTAGCCAGGCAAAAGCAAGGAAGTGCAAGAGGAACTGGCAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTAGAAGCACTTCAGGCTTTGCGGAATGCTGGTGAAGAGGTGCGCATGGACGTCAAGGAAGGGACAGGAAAGAGGATGGAGAATTTGAAACGAAAGAGAAAAGCAGAGAAAAAACGTAATGTCTTCTGA 1878 0.4276 MYIHISFAPCYQVINVEDDNDEEDIDEMEFYAWNELRLHPLLMKAICKLGFKEPTPIQKACIPAASHQGKDVVGASETGSGKTLAFGLPILQRLLEEREKATKMVEQRGEEPDKYAPTGLLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQSGHFKELQSIIDMLPMSNTPGGDDPQSAQNCITISSYQRKKRQTLVFSATVALSADFRKKLKRASTKQNQSVLDGFNSIEALSERAGMRPNTAVIDLTNPTILAAKLEESFIECKEEDKDAYLYYILTVHRQGRTIVFCTSIAALRHISSLLRILGTNAWTLHAQMQQRARLKAMDRFREDENGILVATDVAARGLDIPDVRAVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTTKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSIARQIDKIARKDSQEKAQKSWFERSAESVELVVENYDSEEERVKKYRQMKASSTQLKKLQQAGITPLMQEQFQQLARQKQGSARGTGKGKLVVIGQDCVEALQALRNAGEEVRMDVKEGTGKRMENLKRKRKAEKKRNVF 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1412 625 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 317 478 IPR001650 -
Lele50g1412 625 Coils Coil 91 111 - -
Lele50g1412 625 SMART ultradead3 50 290 IPR014001 -
Lele50g1412 625 CDD DEADc_DDX24 42 307 - -
Lele50g1412 625 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 280 IPR014001 -
Lele50g1412 625 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 452 IPR027417 -
Lele50g1412 625 MobiDBLite consensus disorder prediction 601 625 - -
Lele50g1412 625 Gene3D - 12 282 IPR027417 -
Lele50g1412 625 SMART helicmild6 357 438 IPR001650 -
Lele50g1412 625 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 202 210 IPR000629 -
Lele50g1412 625 Gene3D - 314 569 IPR027417 -
Lele50g1412 625 CDD SF2_C_DEAD 318 447 - -
Lele50g1412 625 Pfam Helicase conserved C-terminal domain 329 437 IPR001650 -
Lele50g1412 625 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 31 59 IPR014014 GO:0003724
Lele50g1412 625 Coils Coil 602 622 - -
Lele50g1412 625 Pfam DEAD/DEAH box helicase 55 263 IPR011545 GO:0003676|GO:0005524
Lele50g1412 625 PANTHER RNA HELICASE 22 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1412 Lele-ChrLele50 18790729 18797700 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1412 32 478 Eukaryotic Initiation Factors Gene Family AT5G11200 29.451 2.41e-42 157