Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1409 ATGTCTCAGCTCATCTCCTTCAGCTCTTTCCCTCCATCTCAAACGCCGCCGTTTGCCACTCATCGTAGTGTTGGCTGTAGAACGGCCGCCATTAACCGGCCTCGTAACGAGCTAAGGAAGCAGGGAGGGATTGCCTTGACAGTGTTATTGCTTAGGCTGATTCAAATTTGGGGAAATCAAGCAAATTTAAGCCCTCATATATCCCTATTGTCTTTGGTTGGTCGTGCGGTTGGCTTCTGCAACTCTTTGTATTTTCCCATGGAGGTCAATCCAACAGAAACCTCTGCTCAGCACCAAAAGAGAAGGCCCAAGGGAAAACGAAGCCGGGAACACCCAGAACTCAAACGGCTGAACTCATTGTCGTGGAACCCCTCTCTTTCTGAAAATGATGATCCTTTTTCTTTGCTTGTAGGCTCAAATGAACTTGAAGGAGGTTTCCTGTCACTAGAAGAGATTGATGAAGCTGCGTATGGTTTAGAAATCCCAGACTCCAAAGAAGACAAGAGGAAGAAGTCTAAACCTATAGCAGATTTAAAGAAACAGAAGCTAAGTGAAGTAGAGGGTGCCTGTAATGATGAGGCTGGGGTGACTTTTGAAGAGAACAAGGATGAGAGTGTGATGACTATAAAGAAGGAAAAGAAGAAGGAAAAGAAGAAGGAAAAGAAGAAGAAAAAGAAGAAGAAGGAAGCTGCTGACCAATGGAAGGATACCATGTGGCAAGGAAAGGCTTCAAGTGTCATATGCAAGGAAAAGAATAGGTTTTCAATGCTACCTATGGGTTTTGCTCCCTGTTATCAAGTTATTAATGTGGAAGATGATAATGATGAAGAGGACATTGATGAAATGGAATTTTATGCGTGGAATGAGTTGAGACTTCATCCTCTGCTCATGAAAGCAATTTGCAAGCTTGGTTTCAAGGAGCCCACGCCAATACAGAAAGCTTGTATTCCAGCTGCTTCTCATCAAGGGAAGGATGTTGTTGGGGCTTCTGAGACTGGATCTGGGAAAACCCTTGCTTTTGGTTTACCCATTTTGCAACGCCTTTTAGAGGAGAGGGAGAAGGCTACAAAGATGGTTGAACAAAGGGGTGAAGAACCTGACAAATATGCTCCTACTGGCCTTCTAAGGGCTCTAATAATTGCTCCAACTAGGGAACTGGCACTTCAGGTCACGGATCATCTGAAAGCAGTAGCCAAATATATCAATGTTAGAGTGACTCCTATAGTTGGGGGCATTTTAGCAGAAAAACAGGAGAGACTCTTAAAAGCAAGGCCTGAGATTGTTGTTGGGACTCCAGGGAGGTTATGGGAACTTATGTCAGCTGGAGAAAAGCATCTAGTTGAGTTACATTCCTTGTCATTCTTTGTGCTTGATGAGGCTGATCGAATGATACAAAGTGGTCATTTTAAAGAGTTGCAATCAATAATTGACATGCTCCCCATGTCCAACACGCCTGGTGGGGATGATCCTCAATCTGCACAAAATTGCATTACAATTTCAAGCTACCAAAGAAAGAAAAGACAAACTCTAGTTTTTTCGGCAACTGTTGCACTATCTGCTGATTTTCGCAAGAAGCTGAAGCGCGCTTCAACAAAACAAAATCAATCAGTGTTAGATGGATTTAATTCCATTGAAGCCCTGTCTGAACGTGCAGGAATGAGACCCAATACTGCAGTGATTGATCTCACCAATCCAACAATATTGGCAGCCAAGCTTGAAGAGTCATTTATTGAATGCAAAGAAGAAGACAAAGATGCTTATCTGTACTATATTTTGACCGTCCATAGGCAAGGCCGCACAATAGTATTCTGTACATCAATTGCAGCTTTGCGCCATATCTCTTCTCTACTTCGCATTCTTGGCACTAATGCTTGGACTCTTCATGCCCAAATGCAGCAGCGAGCACGTTTAAAGGCCATGGATCGCTTTCGTGAAGATGAAAATGGCATACTTGTTGCTACAGATGTTGCAGCTAGGGGTCTGGATATTCCTGACGTTAGAGCAGTTGTCCACTATCAGCTTCCACATTCTGCAGATGTTTATGTTCATAGAAGTGGAAGAACAGCTAGGGCTTCTGCTGAAGGGTGCAGCATTGCTTTAATCTCACCAAAAGATACAACAAAGTTTGCTTCGTTGTGCAAGTCCTTCTCCAAGGACACTTTTCAGCGATTTCCTTTAGAGAATTCATACATGCCAGAAGTTCTTAAGCGATTGTCTATTGCCCGTCAAATAGACAAAATAGCACGAAAGGATTCACAGGAAAAAGCTCAGAAAAGCTGGTTTGAGCGGAGTGCTGAATCAGTGGAGTTAGTTGTGGAAAATTATGACAGTGAGGAGGAAAGAGTGAAGAAATATAGGCAAATGAAAGCCAGCTCTACTCAGTTGAAGAAGTTGCAGCAGGCGGGGATCACACCGCTGATGCAGGAACAATTCCAACAATTAGCCAGGCAAAAGCAAGGAAGTGCAAGAGGAACTGGCAAGGGAAAATTGGTTGTGATTGGTCAAGATTGTGTAGAAGCACTTCAGGCTTTGCGGAATGCTGGTGAAGAGGTGCGCATGGACGTCAAGGAAGGGACAGGAAAGAGGATGGAGAATTTGAAACGAAAGAGAAAAGAAGAGAAAAAACGTAATGTCTTCTGA 2640 0.4341 MSQLISFSSFPPSQTPPFATHRSVGCRTAAINRPRNELRKQGGIALTVLLLRLIQIWGNQANLSPHISLLSLVGRAVGFCNSLYFPMEVNPTETSAQHQKRRPKGKRSREHPELKRLNSLSWNPSLSENDDPFSLLVGSNELEGGFLSLEEIDEAAYGLEIPDSKEDKRKKSKPIADLKKQKLSEVEGACNDEAGVTFEENKDESVMTIKKEKKKEKKKEKKKKKKKKEAADQWKDTMWQGKASSVICKEKNRFSMLPMGFAPCYQVINVEDDNDEEDIDEMEFYAWNELRLHPLLMKAICKLGFKEPTPIQKACIPAASHQGKDVVGASETGSGKTLAFGLPILQRLLEEREKATKMVEQRGEEPDKYAPTGLLRALIIAPTRELALQVTDHLKAVAKYINVRVTPIVGGILAEKQERLLKARPEIVVGTPGRLWELMSAGEKHLVELHSLSFFVLDEADRMIQSGHFKELQSIIDMLPMSNTPGGDDPQSAQNCITISSYQRKKRQTLVFSATVALSADFRKKLKRASTKQNQSVLDGFNSIEALSERAGMRPNTAVIDLTNPTILAAKLEESFIECKEEDKDAYLYYILTVHRQGRTIVFCTSIAALRHISSLLRILGTNAWTLHAQMQQRARLKAMDRFREDENGILVATDVAARGLDIPDVRAVVHYQLPHSADVYVHRSGRTARASAEGCSIALISPKDTTKFASLCKSFSKDTFQRFPLENSYMPEVLKRLSIARQIDKIARKDSQEKAQKSWFERSAESVELVVENYDSEEERVKKYRQMKASSTQLKKLQQAGITPLMQEQFQQLARQKQGSARGTGKGKLVVIGQDCVEALQALRNAGEEVRMDVKEGTGKRMENLKRKRKEEKKRNVF 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1409 879 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 456 464 IPR000629 -
Lele50g1409 879 Coils Coil 856 879 - -
Lele50g1409 879 Coils Coil 207 237 - -
Lele50g1409 879 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 571 732 IPR001650 -
Lele50g1409 879 PANTHER RNA HELICASE 217 797 - -
Lele50g1409 879 Coils Coil 345 365 - -
Lele50g1409 879 MobiDBLite consensus disorder prediction 855 871 - -
Lele50g1409 879 MobiDBLite consensus disorder prediction 201 233 - -
Lele50g1409 879 CDD DEADc_DDX24 296 561 - -
Lele50g1409 879 MobiDBLite consensus disorder prediction 855 879 - -
Lele50g1409 879 Pfam Helicase conserved C-terminal domain 583 691 IPR001650 -
Lele50g1409 879 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 317 534 IPR014001 -
Lele50g1409 879 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 376 706 IPR027417 -
Lele50g1409 879 SMART ultradead3 304 544 IPR014001 -
Lele50g1409 879 Gene3D - 568 823 IPR027417 -
Lele50g1409 879 MobiDBLite consensus disorder prediction 91 123 - -
Lele50g1409 879 MobiDBLite consensus disorder prediction 1 21 - -
Lele50g1409 879 CDD SF2_C_DEAD 572 701 - -
Lele50g1409 879 Gene3D - 266 535 IPR027417 -
Lele50g1409 879 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 285 313 IPR014014 GO:0003724
Lele50g1409 879 SMART helicmild6 611 692 IPR001650 -
Lele50g1409 879 Pfam DEAD/DEAH box helicase 309 517 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1409 Lele-ChrLele50 18762625 18773198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1409 286 732 Eukaryotic Initiation Factors Gene Family AT5G11200 29.451 1.80e-41 157