Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1408 ATGGGTAGAGGAAGAGTGGAGCTGAAGAGGATCGAGAACAAGATAAATCGGCAAGTAACATTTGCCAAGAGGAGAAATGGGCTTCTGAAGAAGGCTTATGAACTCTCCGTACTCTGCGATGCTGAGGTTGCTCTTATCATCTTCTCCAACCGAGGCAAGCTCTACGAGTTCTGCAGCAACTCAAGCATGGCCAACACAATTGAACGGTACCAAAGATGCAGCTATGGAGCCTTGGAAGCAGACCAAACAGCAATGGAGACACAGAGGTGCTACCAAGAGTATCTCAAGCTGAAATCAAAAGTTGAGGGACTACAGCGCACACAGAGAAATCTGCTTGGGGAAGAACTGGAGCAGTTGGGCGTAAAGGATCTTGAGCAGCTTGAACGTCAGCTGGACTCTTCACTAAAACAAATCAGGTCGAATAAGACGCAGCATTTGCTTGATCAACTCACTGATTTGCAAAGGAAGGAAGAGATGCTTCTGGAAACTAACAGTGTCTTGAGGTGCAAGTTGAACGAAATAAATATAAGCCTTCAACCATCATGGGAAGCAAGGGAGGGAAATGATTCATACGGCCGCCAGCCTCCACACTCGGAGGGAATCTTTGGGATTGCACAATGCAGTCATACATTGCACATGGGCTTTGGTTCTGCAGAAACAAATGAAGCAGCAGCTGGAACCTCAGCCCAAAATGCTAGTGAATTTCTACCAGGATGGATGGCATGA 726 0.4683 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSNSSMANTIERYQRCSYGALEADQTAMETQRCYQEYLKLKSKVEGLQRTQRNLLGEELEQLGVKDLEQLERQLDSSLKQIRSNKTQHLLDQLTDLQRKEEMLLETNSVLRCKLNEINISLQPSWEAREGNDSYGRQPPHSEGIFGIAQCSHTLHMGFGSAETNEAAAGTSAQNASEFLPGWMA 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1408 241 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele50g1408 241 FunFam MADS-box transcription factor 1 13 88 - -
Lele50g1408 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lele50g1408 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lele50g1408 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lele50g1408 241 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
Lele50g1408 241 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 175 - -
Lele50g1408 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lele50g1408 241 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele50g1408 241 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Lele50g1408 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lele50g1408 241 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Lele50g1408 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lele50g1408 241 Coils Coil 121 144 - -
Lele50g1408 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1408 Lele-ChrLele50 18734764 18740572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1408 1 240 MADS-box Gene Family AT5G15800 57.854 7.25e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele50g1408 K-box 1e-25 No_clan