Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1404 ATGGAATTTCCGATTCTCTGGAAAGCTACAAAACACCGCGACAAGCTTTTGGGAGTAGTGCAAATCATGTTGAGTCATCACGCTGAATCTGTGATGGAATCTTGGGGTTATCTCTCAGAAGGCTATTTGATTTCTGATGAGATGGATTTTTCACTCGAAGCTTTTATGAGAGGCAAAAAGGGCAAAGATTCCTGTAACTTGGAGAGAGATGAATTTGGTTCCAGTTGTGGGGAAGCTAAAAGCATGGAAGTTTTTGACCTGGGATTTCGTGACTTGTTTCAAAATGAGCTAGATAGAAATCGTAGTAAAAGAGTGGCTTCCTCTACCAATTTTATTGCCATGGATTCATCTTTTGCAGAACAAGAATCTCAGCCAATGTTTTTAGGTTCTCTAATTGAATCTAGAAGTCCCAATTCATCACTGATTGATTTGAAGCTTGGGAGAATAGCAGATTGTAATAAAAATGCAAGTAGTGATAGAATTGCAAGGAGAGCTCGGTGTTCCGGCTCACCAACTCAGACGCCTTTTTGTCAAGTTTATGGTTGTAACATGGATCTTAGCTCCTCAAAAGAGTACCACAAAAGGCATAGAGTTTGTGATGCACACTCCAAGACAGCCAAAGTTATTGTTAATGGTATTGAGCAGAGGTTTTGTCAGCAGTGTAGCAGGTTCCACTTGCTAGCCGAGTTTGATGAGGGCAAGCGCAGTTGTCGCAGACGTCTAGCTGGACACAATCAACGCAGAAGGAAGCCTCAGTTTGATTACTTATCTGGTAAACCCTACAAGATGCTTCAGTTACATCAAGGGACAAAAAATCCGGACGCTTCATTTCAGAAGAGACCCCAATTTGCCTCACAAGACATGATCAGTTGTGGCATTTTGTATGAACAAACCAATCTCAGCGTCACACGTAGTACGAGCTGTGCTCTCTCTCTCCTGTCAGTTCACTTGCAGAACCCGCCATGCCACTCAGCAGGAAACCTGGGACCTAGTTCCCATGCTTGTCGCACGGATGAAAAAGTTTCCAAAATTCATTTGGGCAAAAACCCTGTGGACAAGCATGAGCAAAATGATTCATCATCATCACAACATGGATTGAGCTCCTTGGAAGCTATAAAGAACGGATCCATATTGCACTCTAATGCTGATTGTGCTGATCATCTTCAGGTTTGCCAAACATCAGAATTATGGGATGCCAAACACTATGTTTCAGATGAGGATGGAGACATTGTTGATCTTTTGCAATTGTCTTCGCATCTTCAAAGGGTGGAGCATAAGAGGAATTCATTTCTTCAGTGA 1299 0.4234 MEFPILWKATKHRDKLLGVVQIMLSHHAESVMESWGYLSEGYLISDEMDFSLEAFMRGKKGKDSCNLERDEFGSSCGEAKSMEVFDLGFRDLFQNELDRNRSKRVASSTNFIAMDSSFAEQESQPMFLGSLIESRSPNSSLIDLKLGRIADCNKNASSDRIARRARCSGSPTQTPFCQVYGCNMDLSSSKEYHKRHRVCDAHSKTAKVIVNGIEQRFCQQCSRFHLLAEFDEGKRSCRRRLAGHNQRRRKPQFDYLSGKPYKMLQLHQGTKNPDASFQKRPQFASQDMISCGILYEQTNLSVTRSTSCALSLLSVHLQNPPCHSAGNLGPSSHACRTDEKVSKIHLGKNPVDKHEQNDSSSSQHGLSSLEAIKNGSILHSNADCADHLQVCQTSELWDAKHYVSDEDGDIVDLLQLSSHLQRVEHKRNSFLQ 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1404 432 Pfam SBP domain 177 250 IPR004333 GO:0003677
Lele50g1404 432 ProSiteProfiles Zinc finger SBP-type profile. 174 251 IPR004333 GO:0003677
Lele50g1404 432 SUPERFAMILY SBT domain 175 256 IPR036893 GO:0003677|GO:0005634
Lele50g1404 432 FunFam Squamosa promoter-binding-like protein 14 168 238 - -
Lele50g1404 432 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 131 333 IPR044817 GO:0003677
Lele50g1404 432 Gene3D - 167 238 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1404 Lele-ChrLele50 18671199 18677266 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1404 142 268 SBP-box Gene Family AT1G69170 62.406 4.13e-49 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lele50g1404 SBP 2.2e-31 No_clan