Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1402 ATGTCTCGGGGTTGGGATACCATGCAAGAGGCTGCTGGACACAGTGACAGTGAGGTGTGGGCATTGCAGCAACCTGTCGTTCCTCAGCACCAGGGGTTTTATAGTGATTACAAAAAGGGGCAAGCTTCATCGTCATCTTCCTCCTCCTCCTTAACTACCTCCAATGATCCAGCCTCCCCCAAGGCAGCTCCTTTCGTTGTGAAACGTTATCAACTTGCACTATATATATATTCTCCTGAGAAGAAACACCGACTTCCTTCGGCTTACAATCGCTTCATGAAAGAGGAGATACAGCGCATCAAAGCAGCCAATCCTGAGATTCCTCATCGGGAAGCTTTCAGTGCTGCAGCAAAAAATGTAAAGTCTTATTTACTTCACACTATTCTTCGCAAAGCATTCATGTTACTATATCCAACACAAACACACACACGCACACACACATATAACCCTTGTAGAAGAAGTAGAAGAAGATTACATTCTGAAATTAACTGGTTTGTTCATAACAACAGTGGTCAAGGTACATACCAAATTCGCCAAGCCCTTCACTTTCAGAATGAGAGCTGTGTGGCAATGGAATATTAG 582 0.4399 MSRGWDTMQEAAGHSDSEVWALQQPVVPQHQGFYSDYKKGQASSSSSSSSLTTSNDPASPKAAPFVVKRYQLALYIYSPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNVKSYLLHTILRKAFMLLYPTQTHTRTHTYNPCRRSRRRLHSEINWFVHNNSGQGTYQIRQALHFQNESCVAMEY 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1402 193 MobiDBLite consensus disorder prediction 37 60 - -
Lele50g1402 193 SUPERFAMILY HMG-box 72 118 IPR036910 -
Lele50g1402 193 PANTHER PROTEIN YABBY 6-RELATED 38 122 IPR006780 GO:0007275
Lele50g1402 193 MobiDBLite consensus disorder prediction 37 59 - -
Lele50g1402 193 Pfam YABBY protein 40 121 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1402 Lele-ChrLele50 18627738 18629924 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1402 1 124 C2C2-YABBY Transcription Factor Family AT1G69180 49.242 9.34e-23 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Lele50g1402 YABBY 2.3e-25 CL0114