LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g1398	ATGCAGCCCCCAACAAGAGTTGCCAAGGCCTTCAGCGCTATGAAGGACTTAGGAATTTCTTGTGATGAAGTGAAACCAGTGTTGCAAAAGCTGTTAAGATTGTCTGATAACAAATGGGAATATATTGAAGAAGATAACTATCGAACACTTGTAGATGCATACTTTGAGCTTAAGGATGATAAGCCGAAGCCAAGAGAAAAGCTCTCATCAGTCATCATGGTGGAGAAAGACACTCAATCATTGGTAGATGAAGATGATGTGCTTTTGTTAACCACCGACAACTCAAGACAACTATTATCTGCAGAAGAGAATGAAACGCCTCGAAATACTTTTGGACGGGAAATCACTGAATCATCTGAACCTTTGTTGAGCAATATGAGACCTAAAATCATTCCTCAATCATTGAAAACAAGAATTAGCGAGGTAGAAAGGATATCAAAGTTGCCTTGCATGGCCGCTGTAGATAGAAAATCAAATTCTGAGAAAGAATATTCTGCAAGGCATGGGGAAGAACCTTTCAACAAGTTGCAGAGTTCTGCTACTCTAGCAGAAAGGAGTGATGGTTTTTCCTTTGTAGCCATCCTCGACATCATCATCTACGTTATTTACTACATTGGTCCATCTGAGGTTTGGACTAGAAATCATCCTGTCAAGTCGGTGTCTTCTCTGAATCAGGATCTGAACAGTGTCATTGACGATTCTGCACAGAATAACAACCCCACAAGCATAAAGGCTAATAACATTGACATTGCCTCTTCGCCATTGGGAGAAGTGAAAATTTCCTTAAACTGTGACCACGCACTTGGACGTCCAAACTTCAATATTCCAAATTTAAGTGCTGTTATGAAGTTAGTGGAGGAGAAGTACCTTAAGCCTAGCAATATTGTTGGACCCCAATTTTCTATGGTGAGTTTATTAAACGGTTTGTGTGAGAGTTTTCTTAAATTGGGCATGAATATGAATCGAAAGCGTTCACATCCTGAGTTTAACAATGCAAATAGATTAACAAATGGCCCACAACAAGCTGTTGCTCAAGATGAAGGGAAGCTATTTCGGTTTCTTAATGACATAACAAAAGGCTCTGAAAAAGTGAAGATATCGTTGGTAGATGAGTATGGTATTGGGGAATTGCCAAAGTTGAATCACATGCCACATAATCTAATATATCAGAGTGGTAATGTAAATATTGCACTAGCTCGCATGGCGGATGAAGGTTGCTGCTCAAATTGTTTAGGAGACTGTCTTTCTCAAGCATTACCTTGTGCATGTGCTCAAGAAACTGGTGGAGAGTTTGCTTACACGCTGGAGGGCTTGTTGAAAGACGAATTTCTAACATCTTGCATGTCAAGGAAAAAGGAACCTCAAGCTCATCAATTGGTGTACTGTCAAGAGTGCCCAATAGATAGGTCTAAGAATGAATTCATGCCTGAGCAATGCAAGGGGCATCTGATCAGGAAGTTCATTAAGGAATGTTGGAGGAAATGTGGATGTGACGTACAGTGTGGAAATCGTATAGTGTTCTTTTCCGGTGAGGCAAAGGGCTGGGGCCTTAGAACACTAGAAGATTTGCCTAGGCGATCCTTTATATGTGAATATGTGGGTGAAATATTAACCAACATGGAGTTGTATGAAAGAATTGTGCACAAAAATGGCAATGACAGACATACATATCCTGTAACCCTTGATGCAGACTGGGGCTGA	1701	0.4051	MQPPTRVAKAFSAMKDLGISCDEVKPVLQKLLRLSDNKWEYIEEDNYRTLVDAYFELKDDKPKPREKLSSVIMVEKDTQSLVDEDDVLLLTTDNSRQLLSAEENETPRNTFGREITESSEPLLSNMRPKIIPQSLKTRISEVERISKLPCMAAVDRKSNSEKEYSARHGEEPFNKLQSSATLAERSDGFSFVAILDIIIYVIYYIGPSEVWTRNHPVKSVSSLNQDLNSVIDDSAQNNNPTSIKANNIDIASSPLGEVKISLNCDHALGRPNFNIPNLSAVMKLVEEKYLKPSNIVGPQFSMVSLLNGLCESFLKLGMNMNRKRSHPEFNNANRLTNGPQQAVAQDEGKLFRFLNDITKGSEKVKISLVDEYGIGELPKLNHMPHNLIYQSGNVNIALARMADEGCCSNCLGDCLSQALPCACAQETGGEFAYTLEGLLKDEFLTSCMSRKKEPQAHQLVYCQECPIDRSKNEFMPEQCKGHLIRKFIKECWRKCGCDVQCGNRIVFFSGEAKGWGLRTLEDLPRRSFICEYVGEILTNMELYERIVHKNGNDRHTYPVTLDADWG	566

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g1398	566	Pfam	Pre-SET motif	357	504	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Lele50g1398	566	Gene3D	SET domain	336	566	IPR046341	-
	Lele50g1398	566	SMART	preset_2	354	496	IPR007728	GO:0005634\|GO:0008270\|GO:0018024\|GO:0034968
	Lele50g1398	566	Pfam	Ubiquitin-binding WIYLD domain	5	59	IPR018848	GO:0018024
	Lele50g1398	566	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	566	-	-
	Lele50g1398	566	Gene3D	-	1	60	IPR043017	-
	Lele50g1398	566	SUPERFAMILY	SET domain	364	565	IPR046341	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g1398	Lele-ChrLele50	18578997	18581936	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele50g1398	488	564	C2H2 Transcription Factor Family	AT2G23740	37.209	8.09e-11	63.2