Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1387 ATGGAGAGCCACGGTAGCAGTACCGAATGCCGGTGGAGAGCCGAAGACGACATTGGTGGCAACTCGAAAGCTCTTCAAGCTCTCAGAGAACTCATCATATTCCCGCTTCTCTACTCTAACCAAGCTAAGAAGCTCGGTATCAAATGGCCGCAAGGATTGCTGCTGTACGGCCCTCCAGGCACTGGAAAGACAAGTCTGGTGCGAGCTGTTGTTCAGGAATGTGGAGCACATTTGACAATCATCAGTCCTCATTCTGTCCATAAAGCACATGCCGGAGAAAGTGAGAGAATTCTCCGTCAGGCCTTTGCAGAGGCATCATCTCATTCAACTTTGGGCAAGCCATCAGTTATCTTTATAGATGAAATAGATGTACTCTGTCCTCTGCGAGATTCCAAAAAGGAGCAAGATGTTCGAATTGCTTCCCAGCTCTTTACATTGATGGATTCAAATAAACCATCCTCATCTGTGCCAAGAGTTGTTGTGGTTGCATCAACTAACAGAGTGAATGCAATTGACCCAGCCCTTAGAAGGTATGGACGTTTTGATGCTGAAATTGAAGTTACTGCCCCAAATGAAGAGGAGCGTTATCAAATTCTTAAGCTTTACACAAAAAAGATTCCCTTGGATCCCAGTGTTGACTTAAAAATGATAGCTGCATCTTGCAATGGATATGTTGGGGCTGATTTGGAAGCCTTGTGCCGTGAGGCTACTACATTAGCAGCTAAAAGGTCCAGAGATGCAAATGGAATTGCTAGTCACTTAAGCGTAACGATGGAAGATTGGAACAATGCAAGATCTGTTGTTGGTCCAAGCATAACGAGAGGTGTTACAGTGGAAATTCCTAAAGTGACTTGGGAAGATATTGGGGGATTAAAAGAATTAAAGAAAAAGCTTCAGCAAGCTGTTGAATGGCCCATCAAGCATTCTGAAGTATTTTCAAGATTGGGCATTTCCCCAGTACGAGGAATTCTCTTGCATGGGCCTCCAGGATGTTCCAAAACAACCCTTGCCAAAGCTGCTGCACATGCTGCCCAAGCTTCTTTCTTTTCCTTGAGTGGTGCAGAAATGTATTCGATGTACGTTGGAGTGGGGGAAGCATTGCTTCGGAACACTTTTCAAAGAGCGCGCCTTGCAGCACCCAGCATAATATTTTTTGATGAGGCTGATGTGGTAGCCGCCAAACGGGGCGATTCTTCAAGCAATAGCAGTACTGTTGGAGAGAGGCTTTTATCCACTCTTCTGACTGAAATGGATGGTCTAGAAGAAGCTACAGGAATTCTTGTCTTGGCAGCTACAAATCGCCCTTATGCAATAGACGCTGCACTAATGCGCCCTGGACGTTTTGATCTGGTGCTGTATGTGCCCCCACCTGATTTGGAAGCTCGATATGAAATACTGTGTGTACATACACGTGGCATGAAGCTAGAAAATGATGTCAATCTCAAAAGACTAGCTGAAGATACTGAGCGATTCACTGGTGCTGAACTCGAGGGTATATGCAAGGAAGCTGGAATCGTTGCTCTAAGAGAAGACATAGCTGCTACTGTTGTGTGCGATCGCCATTTTCGGGTCGTGAGAAATTCTGTGAATCCAGCATTAACAAAAGAAGAAATTGATTCTTACTCATCTTTCATGAAGACCTCATCTTCAGCATTCTCTAGGCATTTAGAATCAAGTTCAAAACTTGATAGAAAGGAAAGTAATAGTAGTAGTAACATTTTAGGCTCCATGGTTAAACTTGGTATTGTCAGCTGTATACTACTTGCCGCTACTAAATACTTTTTCATTCATGAAGAACAATCTGTTAATGAAGTAGCTGTCACATGA 1827 0.4379 MESHGSSTECRWRAEDDIGGNSKALQALRELIIFPLLYSNQAKKLGIKWPQGLLLYGPPGTGKTSLVRAVVQECGAHLTIISPHSVHKAHAGESERILRQAFAEASSHSTLGKPSVIFIDEIDVLCPLRDSKKEQDVRIASQLFTLMDSNKPSSSVPRVVVVASTNRVNAIDPALRRYGRFDAEIEVTAPNEEERYQILKLYTKKIPLDPSVDLKMIAASCNGYVGADLEALCREATTLAAKRSRDANGIASHLSVTMEDWNNARSVVGPSITRGVTVEIPKVTWEDIGGLKELKKKLQQAVEWPIKHSEVFSRLGISPVRGILLHGPPGCSKTTLAKAAAHAAQASFFSLSGAEMYSMYVGVGEALLRNTFQRARLAAPSIIFFDEADVVAAKRGDSSSNSSTVGERLLSTLLTEMDGLEEATGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILCVHTRGMKLENDVNLKRLAEDTERFTGAELEGICKEAGIVALREDIAATVVCDRHFRVVRNSVNPALTKEEIDSYSSFMKTSSSAFSRHLESSSKLDRKESNSSSNILGSMVKLGIVSCILLAATKYFFIHEEQSVNEVAVT 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1387 608 Gene3D - 273 457 IPR027417 -
Lele50g1387 608 SMART AAA_5 319 458 IPR003593 -
Lele50g1387 608 SMART AAA_5 49 191 IPR003593 -
Lele50g1387 608 Gene3D - 190 272 - -
Lele50g1387 608 CDD AAA 289 456 - -
Lele50g1387 608 FunFam spermatogenesis-associated protein 5-like protein 1 457 543 - -
Lele50g1387 608 Pfam AAA+ lid domain 478 523 IPR041569 -
Lele50g1387 608 Pfam AAA+ lid domain 211 260 IPR041569 -
Lele50g1387 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 281 543 IPR027417 -
Lele50g1387 608 ProSitePatterns AAA-protein family signature. 426 444 IPR003960 GO:0005524|GO:0016887
Lele50g1387 608 PANTHER AAA-FAMILY ATPASE 14 548 - -
Lele50g1387 608 FunFam Cell division control protein 48 homolog B 10 188 - -
Lele50g1387 608 Gene3D - 7 188 IPR027417 -
Lele50g1387 608 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 15 247 IPR027417 -
Lele50g1387 608 Pfam ATPase family associated with various cellular activities (AAA) 323 455 IPR003959 GO:0005524|GO:0016887
Lele50g1387 608 Pfam ATPase family associated with various cellular activities (AAA) 53 187 IPR003959 GO:0005524|GO:0016887
Lele50g1387 608 Gene3D - 458 542 - -
Lele50g1387 608 FunFam Cell division control protein 48-B-like protein 273 457 - -
Lele50g1387 608 CDD AAA 19 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1387 Lele-ChrLele50 18473918 18480259 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1387 254 554 Calmodulin-binding Proteins AT3G56690 46.179 2.70e-81 274