Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1342 ATGGAAGACAAAGACAAAGCAACAGCAGCATCCCACCCTGCAATACCTCTGACTGAGTTCGCCACCGACTCTTCGAGCTGGGGGCTCGGGACCGATGATTCTGATGGCGTCTATTTCTTCTCGGGTGACCGAGATACCAGCAGTATACTCAGCGAGTTCGGGTGGAATCTCAAACCGGAGCAACCGCACCGGATCGGTGTCGATAATGCGTCTAATGTTGCGGGAGGAGAAGGCGGCGGGAGTGGACGAGGAGGATTGTGTTTTCCGGATCACTCTGCTCCGCGTGGCTCGACGGAACAAGCTGATAAGGCAAACTCTGCTGCGGCGGCGGCGGCCGATGCTTCCACATCGAATAATCAATCGGTGTCTTCGAGCTCCAGTGAGGATCCGCCGGAGAAGTCCACCGTCTCAGACGAAAAACCGCTGGAGATACCGAGTAAAGGTAAAAAGAAGGGGCAAAAGCGAATACGGCAGCCGCGGTTTGCATTTATGACAAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGCGCAATAGCTCACTATATACTTTAGCTGGAATAATGCTTTCTTCTCGCAACTTGTACAGGAGCTACTATCGTTGCACAAACAGCAAATGCACGGTGAAGAAAAGGGTGGAGCGCTCTTCGGAGGATCCAACCGTTGTGATAACAACGTACGAAGGCCAACATTGTCATCACACTGTTGGGTTCCCTAGAGCAGGAGCATCAATCATGAGCCATCATGAAGCCGCCGCCTATGTGGCCGCCACAGCCGCGGCCGGCCAGTTAGCTCCGACCATGTCACAGTTCTATTATCCCATCCAATTACCAAGAGACAACACTACTAACCTTTCTTCTCAGGCTCCTCATCCTCATCATCATCACCAGAAGGCACAGGATCATGAACCAGCCGGAGGATCATCCAGCACTGTAATGTGTCCAGATGATGCCGCCTCGCAGCAGCCTCCCACCGATCAAGGACTTCTCGGAGACATCGTTCCCCCCGGAATGCGCAATGGATGA 1029 0.5296 MEDKDKATAASHPAIPLTEFATDSSSWGLGTDDSDGVYFFSGDRDTSSILSEFGWNLKPEQPHRIGVDNASNVAGGEGGGSGRGGLCFPDHSAPRGSTEQADKANSAAAAAADASTSNNQSVSSSSSEDPPEKSTVSDEKPLEIPSKGKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRNSSLYTLAGIMLSSRNLYRSYYRCTNSKCTVKKRVERSSEDPTVVITTYEGQHCHHTVGFPRAGASIMSHHEAAAYVAATAAAGQLAPTMSQFYYPIQLPRDNTTNLSSQAPHPHHHHQKAQDHEPAGGSSSTVMCPDDAASQQPPTDQGLLGDIVPPGMRNG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1342 342 Pfam WRKY DNA -binding domain 173 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele50g1342 342 MobiDBLite consensus disorder prediction 283 342 - -
Lele50g1342 342 MobiDBLite consensus disorder prediction 304 328 - -
Lele50g1342 342 MobiDBLite consensus disorder prediction 132 149 - -
Lele50g1342 342 MobiDBLite consensus disorder prediction 98 131 - -
Lele50g1342 342 MobiDBLite consensus disorder prediction 1 30 - -
Lele50g1342 342 SUPERFAMILY WRKY DNA-binding domain 164 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Lele50g1342 342 ProSiteProfiles WRKY domain profile. 167 237 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele50g1342 342 MobiDBLite consensus disorder prediction 59 159 - -
Lele50g1342 342 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 61 298 IPR044810 GO:0003700
Lele50g1342 342 SMART WRKY_cls 172 236 IPR003657 GO:0003700|GO:0006355|GO:0043565
Lele50g1342 342 Gene3D WRKY domain 157 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1342 Lele-ChrLele50 16097869 16102069 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1342 19 341 WRKY Transcription Factor Family AT1G69310 44.848 4.05e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Lele50g1342 WRKY 7e-15 CL0274