Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1341 ATGAATCAACATTCAAGAAATAATAATAAGGCCATTGCTGATTCAGGCAAGTTTGAAAGTAATGGTGTTGATGCTGCTGCAAGAAATAAGAGCAAGGAGAGAGATTTAAGCTCATCAGATTATGGTCTCAGAGAGAATCCCAGAAAGACAAAGAGGTTTGTTCATCATCATCATCCCTTCTTCACATTACATCAAAATAAGGAGAAGTTCTGTAGAGAATGTGGGAAAGGATTTTCTTCTTTGAAAGCTCTATGTGGTCACATGGCTCGTCACTCTGAAAAAGATCAGAAGCAGAATTTTTCAATGATGGATGCTCAATATGATACTGAAACTTCTGATCCAGAGGATTTGAAGAGAACAAGGTTCACGACCCTTAATAATAACAACCCAACTTCTGCTTCTGTGTCAGAGGTTGAACAAGAAGAAGGAGTAGAAGTGGCTATGTGCTTGATATTATTGTCTAAGGGTTTTTATAGCCATAACAAAGGTCGCTTTGGTTTGGGGAACAAAGAGTCTAATTCTGATAACTATTCTGCAGTTTTAGAGGCAAAATCAAACTCTGTTGATGCCAGAATTGGTATAAATGATGGTCAGAATAACAAGGTTAACATTAAGGACTCTGTTTATAATGCTTCTGAGCTTGTGAAGTTGGGAAAGGACAAGATGAAGTTGAAGTTTTCAGATTCTGGGTATTCTTCTAGATATGGTTCCAAAAATGAAGATTCAAATGTTTCAATTCATGGGGTTTTCAGGAATGATGTTTTTAAGGATTATGATGATGTCTTTGAACCCAGGAAGATGATGATGAACAACAGCAGCAGATTGCACAGAAGCAAGAACAGTACTGAATCAAAGAAACTAGTAGTGTTGGGAAATTCAGACAAGTTTGATTCATTTAACAGTGCCAAACAAGAATATCTTGGTTACAATTTGGAGGATGAAGTTTCCTGCAAGAAGAAGAAGAAGAACCAAACCAGTTTTCCTAATCATGACTCAGAAGAATCATATGATAGTGCTGAGAAAATCACAGACAGTAGTACTGATTCTGATTCTTTTCCTTATTCTTATCAGAAGCCTAAGAGTAGTAACAAGGCCAAGATGAAGAAAGTGATAAAGAAGTCAAAGAAAACAAAGGAACATGAGTGCCCAATCTGCAACAGAAATTTCAGATCAGGCCAAGCCTTGGGAGGTCACAAAAGGTCCCATTTTGTAGGTGGATTTGAAGAGAACAACACTGAAATAGTCAAACAAGAATCTCAATCTCCTTCTTCTCCTTCTCCTTCTTCTTCTCCTGCTGTTATTGTTCCTTGCCTGATTGATCTTAACCTACCTGCTCCTGTTGATGAATAG 1350 0.3748 MNQHSRNNNKAIADSGKFESNGVDAAARNKSKERDLSSSDYGLRENPRKTKRFVHHHHPFFTLHQNKEKFCRECGKGFSSLKALCGHMARHSEKDQKQNFSMMDAQYDTETSDPEDLKRTRFTTLNNNNPTSASVSEVEQEEGVEVAMCLILLSKGFYSHNKGRFGLGNKESNSDNYSAVLEAKSNSVDARIGINDGQNNKVNIKDSVYNASELVKLGKDKMKLKFSDSGYSSRYGSKNEDSNVSIHGVFRNDVFKDYDDVFEPRKMMMNNSSRLHRSKNSTESKKLVVLGNSDKFDSFNSAKQEYLGYNLEDEVSCKKKKKNQTSFPNHDSEESYDSAEKITDSSTDSDSFPYSYQKPKSSNKAKMKKVIKKSKKTKEHECPICNRNFRSGQALGGHKRSHFVGGFEENNTEIVKQESQSPSSPSPSSSPAVIVPCLIDLNLPAPVDE 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1341 449 MobiDBLite consensus disorder prediction 345 361 - -
Lele50g1341 449 ProSitePatterns Zinc finger C2H2 type domain signature. 382 402 IPR013087 -
Lele50g1341 449 MobiDBLite consensus disorder prediction 1 50 - -
Lele50g1341 449 Pfam C2H2-type zinc finger 380 402 - -
Lele50g1341 449 Pfam C2H2-type zinc finger 71 93 - -
Lele50g1341 449 MobiDBLite consensus disorder prediction 391 432 - -
Lele50g1341 449 MobiDBLite consensus disorder prediction 1 15 - -
Lele50g1341 449 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 449 - -
Lele50g1341 449 MobiDBLite consensus disorder prediction 26 48 - -
Lele50g1341 449 MobiDBLite consensus disorder prediction 319 367 - -
Lele50g1341 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 69 96 IPR013087 -
Lele50g1341 449 ProSiteProfiles Zinc finger C2H2 type domain profile. 380 402 IPR013087 -
Lele50g1341 449 SMART c2h2final6 69 91 IPR013087 -
Lele50g1341 449 SMART c2h2final6 380 402 IPR013087 -
Lele50g1341 449 MobiDBLite consensus disorder prediction 412 431 - -
Lele50g1341 449 MobiDBLite consensus disorder prediction 319 344 - -
Lele50g1341 449 ProSitePatterns Zinc finger C2H2 type domain signature. 71 91 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1341 Lele-ChrLele50 16083651 16085000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1341 24 449 C2H2 Transcription Factor Family AT1G26610 33.042 1.74e-45 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele50g1341 zf-C2H2_6 2.8e-10 CL0361