Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1304 ATGTTGGGGCTTCGTTCTGCATTCCCCCCCCCCCCCTTCAATTTCTATTTCCTTGATTATTACTTCGGGCTTGTAGGTTTCGGAAAACTGAGCGTAGTGGTATATGTTGATCGTCTGGTAAGCCCTGTGAACGTTGAGTCTGTGACGCTTCCGGCTGAGTTCCTGTCTGACCCGTCTCAAGCGAGTAAGTCTATGGATGTTGCGGGACCCTCTGGTTCTGCTCCGCCGGCAGAGAGCGATGACACTAGGTCAGAGCATGATGAGGACGGTTATGAGGATGAGCCACTGATCCCGAACGCAGAGTGTCGCATTTGTCAGGAGGAAGATAACATTAACAATTTAGAAATACCTTGCGCTTGCAGCGGCAGTCTGAAGTATACTCATCGAAAGTGCGTCCAGCATTGGTGTAATGAGAAAGGAGATACAATTTGTGAGATATGCAATAAGCCCTATCAACCTGGGTATATTGCTCCACCTCCTCGCCCTAATCCTGAGGAAACTACCATTGATGTAGGTGGAGGCGGGACAATCTCTGGCACACAATTGGACTTGCATGATCCTCGACTCTTGGCAATCGCAGAGGCTGAACGCCAATTCTTTGAAGCTGAATATGATGAGTATGCTGCTTCTCATGCTAGTGGAGCTGTCTTTTGCCGTTCAGCTGCTTTAATTTTAATGGCCCTTCTACTCCTGCGACATGCAGTTCTTGTCCCAGATGCTAATGCCAATGATGATCCATCAACTTTCTTCTCTTTGGTACAGATCTTCTTACTTCGTTCAGTTGGATTTCTCTTACCTTGCTATATTATGTCTTGGGCAATCAGCATCTTGCAAAGTAGGAGGCAAAGACAAGAGGCAGCAGCACTGGCTGCAACCCAAGTTGCTTTCGTTCTGCAATCTGGGCGGCGGCGGGGCCTGCAATTTGCCATAGCACCGGGACCATCGGTAAATACACAGCCAGAACACACTGTTTAG 975 0.4841 MLGLRSAFPPPPFNFYFLDYYFGLVGFGKLSVVVYVDRLVSPVNVESVTLPAEFLSDPSQASKSMDVAGPSGSAPPAESDDTRSEHDEDGYEDEPLIPNAECRICQEEDNINNLEIPCACSGSLKYTHRKCVQHWCNEKGDTICEICNKPYQPGYIAPPPRPNPEETTIDVGGGGTISGTQLDLHDPRLLAIAEAERQFFEAEYDEYAASHASGAVFCRSAALILMALLLLRHAVLVPDANANDDPSTFFSLVQIFLLRSVGFLLPCYIMSWAISILQSRRQRQEAAALAATQVAFVLQSGRRRGLQFAIAPGPSVNTQPEHTV 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1304 324 CDD RING_CH-C4HC3_MARCH 102 148 - -
Lele50g1304 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 91 155 IPR013083 -
Lele50g1304 324 SUPERFAMILY RING/U-box 99 152 - -
Lele50g1304 324 MobiDBLite consensus disorder prediction 60 95 - -
Lele50g1304 324 Coils Coil 190 210 - -
Lele50g1304 324 Pfam RING-variant domain 102 147 IPR011016 GO:0008270
Lele50g1304 324 ProSiteProfiles Zinc finger RING-CH-type profile. 94 154 IPR011016 GO:0008270
Lele50g1304 324 SMART ringv_2 101 148 IPR011016 GO:0008270
Lele50g1304 324 Pfam Protein of unknown function (DUF3675) 153 274 IPR022143 -
Lele50g1304 324 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 32 284 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1304 Lele-ChrLele50 13220227 13224225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1304 98 177 C3H Transcription Factor Family AT2G37950 31.522 1.22e-08 52.8