Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1298 ATGACGATGAAACCGATTCCTGGGGAAATAGTTTTCCCTCTTTCTGTGTTCATTCTATTCCTCTGCCAATGTTTCTGGGTTGGTATCACAGAAGATTGCGGAGGGAAGGCAATTGCATATACAATTACTGTGGGCCAATCTGGTCAGTTCAAAACAGTTCAAGCAGCAATTGATTCAATAAAAAGCAACAATGCTCACTGGGTGAAAATTCACATATATCCAGGCAAATACACAGAGAAGGTGCAGATTCCAAGAGATAAACCATGTATCATTTTGGAAGGTGAAGGCAGAGGGATTACAACAATTACGTATAGTGACCACCAACAAACAGATACTAGCGCCACGTTCTCTTCCTGTGCAAACAATATAGTTGCAGCTGCAATCACCTTCGAGAACTCGCTTGATCTCTCCAATGAAGAATCAGGATTGAACCAAATCATAAGTGGAAAAGATGTGAGAGGACCAGCATTGGCAGCTAGAATATATGGCGATAAATCGGCTTTCTTCAATTGTGGCTTTTTAGGTTTTCAAGATACACTTTGGGATGTCCAAGGTCGTCATTACTATAAAAATTGCTATATTCAAGGTGCTGTAGACTTCATCTTTGGCAACGGTCAGTCCTATTTTGAGAATTGTTACGTGAACGTGACGTTAACTACATCGAAGGCTCAAGTTCCTTATGGTTATGTAACGGCACAAGGGCGAAGTTCGGAGGATGAGACCAGTGGTTTTGTATTTCGAGGAGGGAAAGTTGTGGGAAGCGGTCCGGTTTTTCTAGGGAGAGCTTATGGGTCTCATTCAAGAGTTATATTTCGTGGAACATTTCTAGATTCTGTCGTATCTCCTCAAGGATGGGATGCATGGCGTTACACACAAAATGTGGGTAATTTGATGTATGTTGAAGTTAATTGTATTGGCCTAGGGGCAAATCGGGAAAAACGAGTGCCATGGGAGATGAAGCTCTCTTCTCCTCATTTAAATCAGTTTTCGAAATCATCATTCATAGACCAAGATCGATGGCTTGCAAATATACCTCAGTAA 1041 0.415 MTMKPIPGEIVFPLSVFILFLCQCFWVGITEDCGGKAIAYTITVGQSGQFKTVQAAIDSIKSNNAHWVKIHIYPGKYTEKVQIPRDKPCIILEGEGRGITTITYSDHQQTDTSATFSSCANNIVAAAITFENSLDLSNEESGLNQIISGKDVRGPALAARIYGDKSAFFNCGFLGFQDTLWDVQGRHYYKNCYIQGAVDFIFGNGQSYFENCYVNVTLTTSKAQVPYGYVTAQGRSSEDETSGFVFRGGKVVGSGPVFLGRAYGSHSRVIFRGTFLDSVVSPQGWDAWRYTQNVGNLMYVEVNCIGLGANREKRVPWEMKLSSPHLNQFSKSSFIDQDRWLANIPQ 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1298 346 ProSitePatterns Pectinesterase signature 2. 194 203 IPR033131 -
Lele50g1298 346 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 39 342 - -
Lele50g1298 346 Gene3D - 35 345 IPR012334 -
Lele50g1298 346 FunFam Pectinesterase 36 345 - -
Lele50g1298 346 SUPERFAMILY Pectin lyase-like 37 341 IPR011050 -
Lele50g1298 346 Pfam Pectinesterase 44 337 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1298 Lele-ChrLele50 11927283 11932208 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1298 32 289 Carbohydrate Esterase AT2G19150 46.743 9.08e-69 215