Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1290 ATGACGTGTTCCAAGCCCTTCTTCCCTTACCTCATTCTACAGGCATTCAAATTAAACACTGCCGTTTCAAAGCAGCGAACAGGCGGCGGAGAGAAGCCAATCCGGAACAAAAGCTCGCTCGCTCGCTCGATCGGTGTTCAGGTCCACATATCTCTTGAACCTTGCCTCGTCGCTGGATTAAAATTTGATTGTCAACGATCCCAACTGCCAAACACGCAACGATGGAGTTTTGGTCCTCCTTCCAACGATTTTTGTTCGGTGTGCCATGGAGACTATAACAATCCTTGCCAAGCCAATTGTTCTCACTGGTTTTGCGGAAGTTGTATTATGCAAGTGTGGCACCATGGATCAACTGTTAGGCCATGTAGATGCCCGTTATGTCGCCGTCAAATCACGTTGCTGGTTCCAACTGAGGACTTGTTAAGGCAGCGTTATGACCCTGAAGTTGCTGAGGTACTACGAAATATTGAAGCATATAATCGATTGTTTGGGGGTCAGGCAACTGGTCTTGTTCAGAGAATGCAAGATCTTCCTTTTCTCTTGCGAAGGCTGCTGCGGGAGCTGATGGATCCTCACAGGACACTTCCTCTTGTCATTAAGGCTCGTGTCTATATTGCAATGATATCAAGTTTCGCTTACATTGTAAGCCCTGTTGACATTATTCCAGAAGCGGTATTAGGAATATTTGGTTTGTTGGATGATCTCCTTATTGCGCTCATCTGCTTCCTCTATGTTGCTTCTGTTTATAGATCAGTTCTCTATTTCCGTCATGGGGGCTCTCGTGTCTGA 789 0.4613 MTCSKPFFPYLILQAFKLNTAVSKQRTGGGEKPIRNKSSLARSIGVQVHISLEPCLVAGLKFDCQRSQLPNTQRWSFGPPSNDFCSVCHGDYNNPCQANCSHWFCGSCIMQVWHHGSTVRPCRCPLCRRQITLLVPTEDLLRQRYDPEVAEVLRNIEAYNRLFGGQATGLVQRMQDLPFLLRRLLRELMDPHRTLPLVIKARVYIAMISSFAYIVSPVDIIPEAVLGIFGLLDDLLIALICFLYVASVYRSVLYFRHGGSRV 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1290 262 SUPERFAMILY RING/U-box 68 136 - -
Lele50g1290 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 176 IPR013083 -
Lele50g1290 262 ProSiteProfiles Zinc finger RING-type profile. 85 128 IPR001841 -
Lele50g1290 262 ProSitePatterns Zinc finger RING-type signature. 100 109 IPR017907 -
Lele50g1290 262 Pfam Protein of unknown function (DUF1232) 205 239 IPR010652 -
Lele50g1290 262 SMART ring_2 85 127 IPR001841 -
Lele50g1290 262 PANTHER UNCHARACTERIZED 75 257 IPR038896 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1290 Lele-ChrLele50 11697554 11711761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1290 110 260 C3H Transcription Factor Family AT1G72175 75.497 1.04e-67 205