Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1286 ATGATCCACGACGACGAACTTAAAATGTTCCCGGATGGTTCTCAAAGTGACTCAATATTCTGGTCACTGGTCAGGGAAGCAAACTTGAAAATGTGGAACTTCTGGACCAAGGGTTGCATTTTTATGGTGTGTATTTCTGCAATTTCTGGGGCTTTATCTCAGGAACCCGAACTCGGATCTACCCGTGTTGTCTTTCAGACAAATTACGGGGATATTGAATTCGGTTTCTTTCCCACAGTTGCACCCAAAACCGTTCATCACATTTTTAAACTTGTGCGACTTGGAGCCTATAACACAAATCATTTTTTCCGGGTAGATAAGGGCTTTGTTGCCCAAGTAGCGGATGTTATGGGTGGAAGATCCGCGCCCATGAATGAAGAACAAAAAGGAGAAGCTGAAAAGACCGTTGTTGGTGAATTTAGCCAAGTTAAACATGTTAGAGGCATTCTTTCTATGGGAAGGTATAGTGATCCAGACAGTGGATCATCCTCATTTTCAATGCTTCTAGGAGATGCCCCTCATCTTGATGGCCAGTATGCAATATTTGGAAGAGTCACTAAAGGTGATGATACATTGAAAAAGCTTGAGGAACTACCTACTCGTAAAGAAGGGATATTTGTTATGCCAACAGAGCGTATTACTATTCTGTCATCCTATTACTACGACACCGAGAGTGAAGATTGTGAACGAGACAGATCGATTTTGAAACGCAGGCTAGCTGCTTCATCTGTTGAAATCGAAAGACAGAGGATGAAATGCTTCCCCTGA 768 0.4245 MIHDDELKMFPDGSQSDSIFWSLVREANLKMWNFWTKGCIFMVCISAISGALSQEPELGSTRVVFQTNYGDIEFGFFPTVAPKTVHHIFKLVRLGAYNTNHFFRVDKGFVAQVADVMGGRSAPMNEEQKGEAEKTVVGEFSQVKHVRGILSMGRYSDPDSGSSSFSMLLGDAPHLDGQYAIFGRVTKGDDTLKKLEELPTRKEGIFVMPTERITILSSYYYDTESEDCERDRSILKRRLAASSVEIERQRMKCFP 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1286 255 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 177 192 IPR002130 GO:0000413|GO:0003755
Lele50g1286 255 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 76 91 IPR002130 GO:0000413|GO:0003755
Lele50g1286 255 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413|GO:0003755
Lele50g1286 255 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Lele50g1286 255 CDD cyclophilin 64 217 - -
Lele50g1286 255 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 37 255 IPR044233 -
Lele50g1286 255 SUPERFAMILY Cyclophilin-like 62 224 IPR029000 -
Lele50g1286 255 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 64 220 IPR002130 GO:0000413|GO:0003755
Lele50g1286 255 Gene3D - 50 229 IPR029000 -
Lele50g1286 255 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 63 217 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1286 Lele-ChrLele50 11439756 11451079 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1286 63 221 U-box Gene Family AT5G67530 27.711 1.64e-10 58.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1286 50 11439756 11451079 Lele50g1286 50 11439756 11451079 ECH
Lele50g1286 50 11439756 11451079 Lele52g1245 52 10135238 10149555 hybridization