Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1277 ATGTCATTTTCGGGGATTGAACTGGGTGGTGAAGAAGCGAATAATAATAATAATAATAATAATGGTGGTGAGGAAGATCTGTCTGATGATGGGTCTCAAGCGGGTGTAAAAAAGAGGAGGCTTAACATGGAACAGGTTAAGACACTTGAGAAGAGCTTTGAGCTGGGAAATAAGCTTGAACCAGAGAGAAAAATGCAGCTTGCAAGGGCTCTAGGATTGCAGCCCAGACAAATTGCTATATGGTTTCAGAACAGAAGAGCCAGGTGGAAGACAAAGCAGCTCGAGAAAGACTATGATGTTCTTAAAAGACAATATGATTCTATCAAAGCTGATAATGATGCTCTTCAAGCTCAGAACCAGAAACTCCAAGCTGAGATATTTGCATTGAAGAACAGAGAGCCAACTGAGTCAATAAACCTCAACAAAGAAACAGAGGGATCTTGCAGCAACAGAAGTGAGAACAGCTCTGAGATTAAGTTTGATATAACAAGAACACCACCTTTTGAAGATAGTCCTGATCTATCAACACAACATAACAGTGGCATAACCTTATTATTCCCGAAATCTTCTTTGGCTTCCGTTAGGCCTCCTCCTCCTGCGCCTTCTTCTTTTTCAGGAGGAGTGGCTCACCAGCTCTTTCAAGCTTCTTCAAGACCAGAGCTTCATCAGTGCCAGCAGAATAATATGGTAGATAATCATCAGATGGTCAAAGAAGAGAATAATAATAATAACAATAATAATAATCATTTGAGCAATATGTTTTGTGGGATCGATGATCAATCTGGGTTCTGGCCATGGTTGGAGCACCAACATTTCAATTGA 822 0.4039 MSFSGIELGGEEANNNNNNNNGGEEDLSDDGSQAGVKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKRQYDSIKADNDALQAQNQKLQAEIFALKNREPTESINLNKETEGSCSNRSENSSEIKFDITRTPPFEDSPDLSTQHNSGITLLFPKSSLASVRPPPPAPSSFSGGVAHQLFQASSRPELHQCQQNNMVDNHQMVKEENNNNNNNNNHLSNMFCGIDDQSGFWPWLEHQHFN 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1277 273 PRINTS Lambda-repressor HTH signature 63 72 IPR000047 GO:0003677
Lele50g1277 273 PRINTS Lambda-repressor HTH signature 72 88 IPR000047 GO:0003677
Lele50g1277 273 Coils Coil 84 132 - -
Lele50g1277 273 Pfam Homeodomain 38 90 IPR001356 GO:0003677
Lele50g1277 273 FunFam Homeobox-leucine zipper protein ATHB-13 29 96 - -
Lele50g1277 273 MobiDBLite consensus disorder prediction 1 37 - -
Lele50g1277 273 SMART HOX_1 35 96 IPR001356 GO:0003677
Lele50g1277 273 Pfam Homeobox associated leucine zipper 92 132 IPR003106 GO:0006355|GO:0043565
Lele50g1277 273 MobiDBLite consensus disorder prediction 140 161 - -
Lele50g1277 273 MobiDBLite consensus disorder prediction 9 27 - -
Lele50g1277 273 MobiDBLite consensus disorder prediction 137 177 - -
Lele50g1277 273 ProSiteProfiles 'Homeobox' domain profile. 32 92 IPR001356 GO:0003677
Lele50g1277 273 CDD homeodomain 37 93 IPR001356 GO:0003677
Lele50g1277 273 ProSitePatterns 'Homeobox' domain signature. 67 90 IPR017970 GO:0000981|GO:0006355
Lele50g1277 273 Gene3D - 29 98 - -
Lele50g1277 273 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 25 202 IPR045224 GO:0003700
Lele50g1277 273 SUPERFAMILY Homeodomain-like 32 94 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1277 Lele-ChrLele50 10587809 10589450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1277 19 273 Homeobox Transcription Factor Family AT1G69780 61.719 3.16e-98 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lele50g1277 Homeodomain 1.1e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1277 50 10587809 10589450 Lele51g1606 51 16842661 16844406 hybridization
Lele50g1277 50 10587809 10589450 Lele52g1235 52 9376843 9378733 hybridization