Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1263 ATGCTTCTCTTTTTTCGATTTTCTTCCATGCTTTGTGAAATCATGGAAGATATGAAGCAGAGGCAACATCAATATGACAAGGAAGAATCGAAGAAGAAGGAGCGTCATATTGTCTCTTGGACTCCAGAGGAGGATGATATACTTAGAGAGCATATTAGCATTCATGGAACAGACAATTGGACAATTATTGCATCTAAATTCAAGGATAAAACGACAAGACAATGCAGAAGAAGGTGGTACACATACTTAAATTCTGATTTCAAGAAAGGAGGCTGGTCACCAGAGGAAGATATGTTATTGTGTGAGGCTCAGAAGATATTCGGCAACAGATGGACAGAAATAGCCAAGGTGGTTTCAGGAAGAACGGATAATGCTGTGAAAAACCGCTTCTCCACACTTTGCAAAAAGAGAGCAAAATATGAAGCCTTGGCCAAAGAGAACAACCCTTCATTAATCAATTCAAACAACAAAAGGATCACTTTCCAACAAGTTTACAGTACAAATGCTGTGTGGGAGGCTGCAACATCAATTAAGAAGATGCGGGCCCACATCCCTGATGCTGCAGCAAGGATCACCTATGGAGACAGATCACATAAACAATTTGGAACCCCACTTAGTCAGCAATCTAGAGTGCCATTTGCAGTATTATCTAATTTCAATGATAACAACTTGCTAGACCAAACTCCTGTTTGCAGTGCCAAGTTTGACAATTACGCCCAAAATAACAAGACTCAAGGAACATTCCTCAAAAAGGATGATCCAAAGATAAGTGTGTTGATGCAACAAGCAGAATTATTAAGCTCACTAGCAGTGAAAGTTAATACACAGAACATGGACCAGAGTCTTGAGAATGCATGGAAGGTTCTACAAGATTTTTTGAACCAAACAAACAAATCAGATCTTTCAAGACATAAATTAACAAATTTACAGCTTGAAAATCTCAAAGATATGGCGGAGGACATAAAGAGCGGTCAGGAGGGAAGCCAACCATATTCAAGGAAACCAGAGCTATATGAGGACTCTCCAAGTAGCTCTGAATATAGTTCAGGATCAACTATGCATGCCTATTCAGCATGTGATTATTTGGAAGATTCACCGCATCAAAATGTTGGAACTGAAGGGAAGCCTATAGAAAGTGAGGAGAAAGAAGCAATTAGTAGTTGCAAGAAACAAGTTCTTTGCGCTTCAACTGCCGATCCAGCAGATATCTTGCCATCTTGTGAGGAACAGATAAATGATGATTTCATTATTTCTGCCTTGTCAAGTACAGAGTTTAGTTCCCCTATTCAAGTTACTCCTCTATTCAGATCCTTAGCTGCAGGAATTCCCAGCCCACAGTTTTCAGAAAGTGAAAGGAACTTCTTGATAAAGACACTGGGAATGGAATCACCATCTCAGAATCATAGTGCAAAAGCCTCACAACCACCACCCTGCAAAAGAGCATTACTACAAAGTCTATAA 1461 0.397 MLLFFRFSSMLCEIMEDMKQRQHQYDKEESKKKERHIVSWTPEEDDILREHISIHGTDNWTIIASKFKDKTTRQCRRRWYTYLNSDFKKGGWSPEEDMLLCEAQKIFGNRWTEIAKVVSGRTDNAVKNRFSTLCKKRAKYEALAKENNPSLINSNNKRITFQQVYSTNAVWEAATSIKKMRAHIPDAAARITYGDRSHKQFGTPLSQQSRVPFAVLSNFNDNNLLDQTPVCSAKFDNYAQNNKTQGTFLKKDDPKISVLMQQAELLSSLAVKVNTQNMDQSLENAWKVLQDFLNQTNKSDLSRHKLTNLQLENLKDMAEDIKSGQEGSQPYSRKPELYEDSPSSSEYSSGSTMHAYSACDYLEDSPHQNVGTEGKPIESEEKEAISSCKKQVLCASTADPADILPSCEEQINDDFIISALSSTEFSSPIQVTPLFRSLAAGIPSPQFSESERNFLIKTLGMESPSQNHSAKASQPPPCKRALLQSL 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1263 486 Gene3D - 27 88 - -
Lele50g1263 486 SUPERFAMILY Homeodomain-like 37 130 IPR009057 -
Lele50g1263 486 SMART sant 88 136 IPR001005 -
Lele50g1263 486 SMART sant 36 85 IPR001005 -
Lele50g1263 486 Pfam Myb-like DNA-binding domain 40 100 - -
Lele50g1263 486 CDD SANT 92 133 IPR001005 -
Lele50g1263 486 FunFam Transcription factor MYB124 32 88 - -
Lele50g1263 486 Gene3D - 90 163 - -
Lele50g1263 486 PANTHER MYB PROTEIN-RELATED 39 261 - -
Lele50g1263 486 ProSiteProfiles Myb-like domain profile. 39 83 IPR001005 -
Lele50g1263 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 138 IPR017930 -
Lele50g1263 486 CDD SANT 39 83 IPR001005 -
Lele50g1263 486 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Lele50g1263 486 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 32 87 IPR017930 -
Lele50g1263 486 MobiDBLite consensus disorder prediction 322 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1263 Lele-ChrLele50 9921200 9928818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1263 28 333 MYB Transcription Factor Family AT2G02820 58.466 6.09e-124 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele50g1263 Myb_DNA-bind_6 2e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1263 50 9921200 9928818 Lele50g1263 50 9921200 9928818 ECH
Lele50g1263 50 9921200 9928818 Lele52g1224 52 9052144 9058023 hybridization