Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1259 ATGCCGCCGAGGACGGCGAAGGAGGGCGAGATATTATTGTCGTCGCCGAATCTGCAGGCTTTCAGCTTCAACGAACTAAATAATGCAACAAAGAACTTCAGTAATGAAAATCGAGTTGGAGAAGGAGGATTCGGCTTTCTTTATAAGGGATGGATCGATCTACGCACTTGTACTCCTTCAAAACCCGGTTCAGGAAGCATCGTTGCCATCAAGAAACTTAAGCCTCAAGTCTTTCAAGGTCACAAGCCGTGGCTCACTGAAGTGAAGTACCTTGGGCGATTGCATCATCTCAATTTAGTGGAACTAATTGGGTACTGGTTAGTGGGAGAGAACAACATATTATTGGTCTATGAGTTTATGCCCAAAGGCAGCTTAGAGAATCATCTCTTTAAAAGTGAACCATTGCAATGGTGTGTGAGAATTAAAGTGGCCATTGGGGCTGCAAGAGGGCTCTCTTTTCTTCACAATGCAGAATCACAAGACATATATCGCGATTTCAAATCTTCTAATATCCTACTTGATGCCGAGTTTAATGCCAAACTCTCAGATTTGGGGTTAGCAAAGGAGGGTCCTTCTGGGGACAACACTCATGTGCCTACTCAAGTGGTTGGTACTCATGGTTATGCAGCTCCTGAATATATTGCCACAGGCCATTTAACAGCAAAAAGTGACTTTAGGATCATGGACACCAAATTAGGTGGTCGATATCCACAACATGCAGCCTACGTGGCAGCTGACTTAGCACTTCAGTGTCTTAATGTTGAAGCCAAGGCTAGGCCTTCTGTGACTGAGGTTTTAGCTACATTGGAACAAATCAATGAAGTCCTTAGAAACAATAATAATTGTAACAACAACAATATTGCTGCATGA 870 0.4322 MPPRTAKEGEILLSSPNLQAFSFNELNNATKNFSNENRVGEGGFGFLYKGWIDLRTCTPSKPGSGSIVAIKKLKPQVFQGHKPWLTEVKYLGRLHHLNLVELIGYWLVGENNILLVYEFMPKGSLENHLFKSEPLQWCVRIKVAIGAARGLSFLHNAESQDIYRDFKSSNILLDAEFNAKLSDLGLAKEGPSGDNTHVPTQVVGTHGYAAPEYIATGHLTAKSDFRIMDTKLGGRYPQHAAYVAADLALQCLNVEAKARPSVTEVLATLEQINEVLRNNNNCNNNNIAA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1259 289 PIRSF ILK 12 226 - -
Lele50g1259 289 PIRSF ILK 234 285 - -
Lele50g1259 289 Gene3D Transferase(Phosphotransferase) domain 1 226 288 - -
Lele50g1259 289 Gene3D Transferase(Phosphotransferase) domain 1 120 225 - -
Lele50g1259 289 Pfam Protein kinase domain 35 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1259 289 PANTHER OS01G0588500 PROTEIN-RELATED 226 273 - -
Lele50g1259 289 ProSitePatterns Protein kinases ATP-binding region signature. 39 72 IPR017441 GO:0005524
Lele50g1259 289 ProSiteProfiles Protein kinase domain profile. 33 289 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1259 289 FunFam Serine/threonine-protein kinase BIK1 2 119 - -
Lele50g1259 289 Gene3D Phosphorylase Kinase; domain 1 5 119 - -
Lele50g1259 289 SUPERFAMILY Protein kinase-like (PK-like) 10 276 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1259 Lele-ChrLele50 9829018 9872707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1259 19 269 Glycoside Hydrolase AT3G07070 43.478 1.44e-68 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele50g1259 Pkinase 1.1e-29 CL0016