Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1257 ATGACTCGATTTGGACCTGTTTTGATATTGCTTAAAATAAGTCTCTCCTGTGAAGTTTCTAATTGTGATTTCAATACTTTTGTGAAGAAACCTTCGGGTAACCAGGATGTGCTGGCCTCTATAGAGGCATCTTTGTCTTATATCCCTGATTCTTCGCTGATACCACCACCCACATCTGGAGCTGATGCTAGTAAAGAAGTGCTCTTGGAAAAGGAAGTTATTAGTAGATCATCAAATGGGAGGAATATTCTTTCAATTGGGGTTGAAGAGAACAATGCAGAAGCGGTTAATTCTGGTTCACTGGGTGATGTTGAGAAAATCAGGCTTGCTGAAGCTGCTATGAAAGTTCAGGCTGGTTTTAGGGGCTATCAGGCTCGTCAGGCATTTCAAACACTAAAAGGTGTCATACAACTGCAAGCTCTTGTTCGAGGCCACTTGGTTAGGAGGCAAGCTGTTTCTACTTTATACTGTGTGAAGGGAATCGTAAAAATTCAAGCGCTTGTTCGCGGTCACAAGGTTCGACATTCTGATATTGGGATTGCTGTTCTCAAAACTTTCCAGGATACTAAATATTCAAATTCTACTGGATTAGTTACATCTACACAGGCAGAGAAGTCGCCGACCGGTGTTTTTGTTAACCAGCTTCTGGCCTCGTCATCCTCAGCGGTTCCCATACATCTTAATTTTGATCCTGAAGAAAGTAACTTCACTTGGAAGTGGCTTGAGCGTTGGTCTACGTCAAACTTTTGGGCACCTCTTCCCAAATCGAAAAAGAAACGTGACTTAAACTCCAATGAGAAGATTGCCAATTGTCAAAAGTTTGAACATAACAAGGGGATACCTAAAAGAAATGTCAAGAAAGCTTCTGGTTTGAAAGTCGATGATGGCTCAACCTCAGAGTTAAACGCACTTAAAAAGCCTGCAAAAAAGGAACATCCACAAAAGGAAACAAAAAACCGTACTAAGAAAACTTCAATGCAGAGTGTTTCTAGTACATCTGAGGTTGCCTCTGAGAAAAGGAAACACGTCACTGGAAAACTTTCGGGTCATGCGGTTACTGATGATTCAGCAGATAAAATGAAAAGTTTGGGAGTGTCAAAATCAAAGCAGTCTGATCTTGAAAAGAGCCTTGGTTTGCCAGCAAAAGAAGAGAATGGCCACTCACTCGAAAATCCTATCGCTGATTCGCAGGCGAGTGTAAAGAATGGTAAACAAGTTATTCAAGGAGATGGTGAGGAATTAAAAATTGATGTGATCCCTCAGAACGCCCTGAGAAGAGCTTCACTGCCTGCCAGTTTCAATGATCAAGATAATAACAGTTCTCATAACACTCCAAGAGTTCCTAGCTATATGGCCCCCACTGAATCCGCGAAAGCTAAGCTAAGAGCACAAGGCTCTCCTAGGTTTGCTGGTGACTTGGTGGACAAAATTGGTATAACCAGGCGTCATTCACTTTCAACTTCATTAAATGCAAGGTTTAACTCATTTTCCCCACGACCAGGACTGTTAACCACAAGCAGCAGAGGAGTGATCAGGACTGATAGATCTCTGTCATCACTAAGAGATGGAACTGACAAGTTCATCCAACCACAGTGGAGAAGGTGA 1605 0.4212 MTRFGPVLILLKISLSCEVSNCDFNTFVKKPSGNQDVLASIEASLSYIPDSSLIPPPTSGADASKEVLLEKEVISRSSNGRNILSIGVEENNAEAVNSGSLGDVEKIRLAEAAMKVQAGFRGYQARQAFQTLKGVIQLQALVRGHLVRRQAVSTLYCVKGIVKIQALVRGHKVRHSDIGIAVLKTFQDTKYSNSTGLVTSTQAEKSPTGVFVNQLLASSSSAVPIHLNFDPEESNFTWKWLERWSTSNFWAPLPKSKKKRDLNSNEKIANCQKFEHNKGIPKRNVKKASGLKVDDGSTSELNALKKPAKKEHPQKETKNRTKKTSMQSVSSTSEVASEKRKHVTGKLSGHAVTDDSADKMKSLGVSKSKQSDLEKSLGLPAKEENGHSLENPIADSQASVKNGKQVIQGDGEELKIDVIPQNALRRASLPASFNDQDNNSSHNTPRVPSYMAPTESAKAKLRAQGSPRFAGDLVDKIGITRRHSLSTSLNARFNSFSPRPGLLTTSSRGVIRTDRSLSSLRDGTDKFIQPQWRR 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1257 534 MobiDBLite consensus disorder prediction 275 403 - -
Lele50g1257 534 Pfam Protein of unknown function (DUF4005) 436 503 IPR025064 -
Lele50g1257 534 MobiDBLite consensus disorder prediction 335 362 - -
Lele50g1257 534 Pfam IQ calmodulin-binding motif 111 130 IPR000048 GO:0005515
Lele50g1257 534 Pfam IQ calmodulin-binding motif 159 174 IPR000048 GO:0005515
Lele50g1257 534 Pfam IQ calmodulin-binding motif 133 150 IPR000048 GO:0005515
Lele50g1257 534 PANTHER IQ-DOMAIN 5-RELATED 98 488 - -
Lele50g1257 534 MobiDBLite consensus disorder prediction 431 450 - -
Lele50g1257 534 Gene3D - 107 157 - -
Lele50g1257 534 SMART iq_5 131 152 IPR000048 GO:0005515
Lele50g1257 534 SMART iq_5 156 178 IPR000048 GO:0005515
Lele50g1257 534 SMART iq_5 108 130 IPR000048 GO:0005515
Lele50g1257 534 ProSiteProfiles IQ motif profile. 133 160 IPR000048 GO:0005515
Lele50g1257 534 MobiDBLite consensus disorder prediction 275 290 - -
Lele50g1257 534 ProSiteProfiles IQ motif profile. 159 185 IPR000048 GO:0005515
Lele50g1257 534 MobiDBLite consensus disorder prediction 304 322 - -
Lele50g1257 534 ProSiteProfiles IQ motif profile. 109 137 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1257 Lele-ChrLele50 9804837 9808638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1257 84 534 IQD Protein Family AT2G02790 33.524 8.49e-67 225