LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g1235	ATGACAACACTCTTGCTTCAAAACGAAAGACTTCCTCCTTCTTCTGACGTTCTCGAATCTATCTGGGCTCACACCTCAAACCCAGCTTTCCCAGGATCAAAATCCATGGTGAATTTTGAGAGACTGAGTGGTTGCAGAGTGACAGACCGGCCATTTCTGCAAGGATTGGAGAAAGAAGAGACAGGGGAAGAAGATTACGAGATGTGTTTTCATCAAGCTGGGAAGAAGAGGAGACTCACAAGCGAGCAAGTTCACTTTCTGGAGAAGAACTTCGAGGTGGAGAACAAGCTAGAACCAGAGAGAAAGGTACAACTAGCGAAGGAGCTTGGGTTGCAGCCAAGGCAAGTTGCTATTTGGTTTCAGAACAGAAGAGCAAGATTCAAGACCAAACAGCTTGAGCAAGACTATGGCAAATTAAAAGCAAGCTATGATAAACTCAAGAGTGATCATGACAATCTTATCAAGGAGAACGACAAGTTAAAAGAAGAGGTGAAATCTCTAAAAAACAGATTGAATGTGAGAGAGAAAGAGAAAGAAGATTCTCACAAGTTAGAGGCCAATGCAGATCCTGGAGATTCAGAAGCAGTGAATTCGGCAGAAGTAGAGCCACAGGGAGATGGAACCAAAGATCACGGCGGACCAGTAGCGGCGAAGGGAATAACCGTGTGGAATAAGAAGCAGGAAGACGCGAATTCATCGGCGAAAAGCGACGTGTTGGATTCGGAGGACACGGAGGCGAACCACCATTCGTGGATGCAACAAGAGCCGGCGGATTCGTCGCTGGCTGCGGAAGTTGAAGCTGAAGCTGCGGAACACTCGGATTTCTCGCAGGACGAAGAACAACACGATAACCTGATGAGAAGCAACTTGCTGAATCTGGCGTGCTTCCCGAAGGTGGAGGAAGATGGATGCTATGACGATCCTCCTGAAGAAGGTTGTAACAATTTTGGATTCCCTGTTGAAGATCAAACCTTCGGTTTTTGGCCTTACTGA	993	0.4663	MTTLLLQNERLPPSSDVLESIWAHTSNPAFPGSKSMVNFERLSGCRVTDRPFLQGLEKEETGEEDYEMCFHQAGKKRRLTSEQVHFLEKNFEVENKLEPERKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEQDYGKLKASYDKLKSDHDNLIKENDKLKEEVKSLKNRLNVREKEKEDSHKLEANADPGDSEAVNSAEVEPQGDGTKDHGGPVAAKGITVWNKKQEDANSSAKSDVLDSEDTEANHHSWMQQEPADSSLAAEVEAEAAEHSDFSQDEEQHDNLMRSNLLNLACFPKVEEDGCYDDPPEEGCNNFGFPVEDQTFGFWPY	330

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g1235	330	ProSiteProfiles	'Homeobox' domain profile.	70	130	IPR001356	GO:0003677
	Lele50g1235	330	MobiDBLite	consensus disorder prediction	171	282	-	-
	Lele50g1235	330	Coils	Coil	129	177	-	-
	Lele50g1235	330	FunFam	Homeobox-leucine zipper protein HAT5	68	132	-	-
	Lele50g1235	330	PRINTS	Lambda-repressor HTH signature	110	126	IPR000047	GO:0003677
	Lele50g1235	330	PRINTS	Lambda-repressor HTH signature	101	110	IPR000047	GO:0003677
	Lele50g1235	330	MobiDBLite	consensus disorder prediction	265	282	-	-
	Lele50g1235	330	ProSitePatterns	'Homeobox' domain signature.	105	128	IPR017970	GO:0000981\|GO:0006355
	Lele50g1235	330	PANTHER	HOMEOBOX-LEUCINE ZIPPER PROTEIN	61	259	IPR045224	GO:0003700
	Lele50g1235	330	MobiDBLite	consensus disorder prediction	171	189	-	-
	Lele50g1235	330	CDD	homeodomain	75	131	IPR001356	GO:0003677
	Lele50g1235	330	Pfam	Homeodomain	75	128	IPR001356	GO:0003677
	Lele50g1235	330	Gene3D	-	69	136	-	-
	Lele50g1235	330	SUPERFAMILY	Homeodomain-like	66	132	IPR009057	-
	Lele50g1235	330	SMART	HOX_1	73	134	IPR001356	GO:0003677
	Lele50g1235	330	MobiDBLite	consensus disorder prediction	230	249	-	-
	Lele50g1235	330	Pfam	Homeobox associated leucine zipper	130	171	IPR003106	GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g1235	Lele-ChrLele50	9429775	9431451	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele50g1235	32	171	Homeobox Transcription Factor Family	AT3G01470	56.429	1.07e-44	152

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HB-HD-ZIP	Lele50g1235		Homeodomain	2.3e-16	CL0123