Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1220 ATGCACATGAACGACGTCGTCATAGACTACTACAAGATTCTGCAAGTGTCACGTAAAGCGAACGACGATGAATTGAAGAAGGCGTACAGAAAAGTAGCCATGAAATGGCACCCAGATAAGAATAATCAAAGCCCTATGAAGATGAAAGAAGCAGAGGCAAAATTCAAACAGATATCAGAAGCTTACGAGGTTCTCGCTAACCCGGCGAAGCGAAAGAATTACGACGATGGCCAAACAAGTCCTCTGAATAACAATAACAATAATGATATCACTTCTAATACTAGGAAGCAAAAGACGTGGGATTTTGGTTCTCAATATCCTCTTAACTTGGAAAGGGTTGTTATGAAGAATCCTGATGAACATATTGCAGTTCATAAGGCGAAAGGTATGAAATCTGCAGTTTCAGAACACAAACTGGTTTTAAGTTTGGAGGATCTTTACAAAGGATGCGAAAGAAGATTGAGAATCTCAAGGAGTGCTATTAATGCTCTTGGAAACATGATGATTGTTGATGAAATATTGGAGATAAACGTGAAGCCTGGTTGGAAGACGGACACAAGGATAACATTTCCTGGAAAAGGAAATCAAGTACCAGGAAGTCCTTGTCCTGCTGATCTGGTTTTTGTGGTGAAAGAGAAACCTCATGCGATTTTCAAAAGGGAAGGAAATGATTTGGTGACAACTCAAAAGATATCACTTTTAGAGGCTCTCACTGGGAAAACAATCAAAGTTACAACGTTGGAAGGAAGAGAAATCCAAGTTTCTGTGACAGATATTGTGAAACCACACACTGAGATTGTGATTGAAGACGAAGGTATGCCCTCGTCAAGTAAACCAGGCCAAAAAGGAAACCTCAGAATTAAGTTTGATATCATCTTTCCATCATCGCAGTTTACTGAATCACAGAAGTGTGGACTCAAAAAGATTTTTAGTGAAGTTGATGATTAA 948 0.3914 MHMNDVVIDYYKILQVSRKANDDELKKAYRKVAMKWHPDKNNQSPMKMKEAEAKFKQISEAYEVLANPAKRKNYDDGQTSPLNNNNNNDITSNTRKQKTWDFGSQYPLNLERVVMKNPDEHIAVHKAKGMKSAVSEHKLVLSLEDLYKGCERRLRISRSAINALGNMMIVDEILEINVKPGWKTDTRITFPGKGNQVPGSPCPADLVFVVKEKPHAIFKREGNDLVTTQKISLLEALTGKTIKVTTLEGREIQVSVTDIVKPHTEIVIEDEGMPSSSKPGQKGNLRIKFDIIFPSSQFTESQKCGLKKIFSEVDD 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1220 315 MobiDBLite consensus disorder prediction 71 94 - -
Lele50g1220 315 SUPERFAMILY HSP40/DnaJ peptide-binding domain 218 297 IPR008971 GO:0006457|GO:0051082
Lele50g1220 315 CDD DnaJ_C 136 296 - -
Lele50g1220 315 CDD DnaJ 9 65 IPR001623 -
Lele50g1220 315 PRINTS DnaJ domain signature 29 44 IPR001623 -
Lele50g1220 315 PRINTS DnaJ domain signature 50 70 IPR001623 -
Lele50g1220 315 PRINTS DnaJ domain signature 11 29 IPR001623 -
Lele50g1220 315 PRINTS DnaJ domain signature 70 89 IPR001623 -
Lele50g1220 315 FunFam DnaJ subfamily B member 13 215 295 - -
Lele50g1220 315 MobiDBLite consensus disorder prediction 73 94 - -
Lele50g1220 315 Gene3D - 215 295 - -
Lele50g1220 315 SUPERFAMILY HSP40/DnaJ peptide-binding domain 136 215 IPR008971 GO:0006457|GO:0051082
Lele50g1220 315 ProSitePatterns Nt-dnaJ domain signature. 55 74 IPR018253 -
Lele50g1220 315 Pfam DnaJ C terminal domain 136 294 IPR002939 -
Lele50g1220 315 SMART dnaj_3 8 70 IPR001623 -
Lele50g1220 315 Gene3D - 134 213 - -
Lele50g1220 315 FunFam Dnaj homolog subfamily b member 131 213 - -
Lele50g1220 315 Pfam DnaJ domain 9 75 IPR001623 -
Lele50g1220 315 SUPERFAMILY Chaperone J-domain 8 90 IPR036869 -
Lele50g1220 315 Gene3D DnaJ domain 8 120 IPR036869 -
Lele50g1220 315 ProSiteProfiles dnaJ domain profile. 9 78 IPR001623 -
Lele50g1220 315 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 3 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1220 Lele-ChrLele50 8934665 8936535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1220 10 82 C2H2 Transcription Factor Family AT1G74250 35.135 1.98e-09 56.6