Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1205 ATGCGCGGATGGGACAGGATGAGAAGATCATCGTCTTCTTCGAGATCGTCCCTTGGAATGGGTTCCAATCCCACTCGTAACCTCCCCAATCGCATACCTTCGAGTCGGGCTGTTCAACTCGGCCGAGTCCAGCCCCAAGCCCCCGGTCATCGTACCGTTTTCTGCAATGATCGGGATACCAATCTTCCCGTCCGATTCAAGGGAAATTCGATATCAACGACAAAATACAATCTTTTCACTTTCTTGCCGAAAGCACTGTTTGAACAGTTCAGGCGGGTGGCTAATCTATACTTTCTTACAATCTCAATTATGTCAACCACACCTATCAGTCCTGTGTCTCCAATAACTAATGTGGCTCCTCTATCACTGGTGCTTCTTATCTCTCTTATTAAGGAAGCTTTTGAGGACTGGAAGCGTTTTCAGAACGACTTGGCTGTAAACAATACTTTGATAGATGTTCTGCAAGGCCAAAAGTGGGTTTCCATACCTTGGAAAAGGTTGCAAGTTGGAGATGTTGTCAGGGTTAAGCAGGATGGGTTCTTTCCTGCAGATCTGCTTTTCCTGGCCAGTACCAATCCTGATGGTGTCTGCTACATTGAGACTTCCAATTTGGATGGGGAAACCAATTTGAAGATTAGGAAAGCATTGGAAAAGACTTGGGATTACCTGACCCCGGAGAAGGCGTCCGAGTTTAAAGGTGAAGTTCAATGTGAACAACCAAACAATTCATTGTATACCTTCACTGGAAATCTTATAATTCAAAAGCAAACATTGCCTCTCAGTCCTAACCAACTTTTGTTGCGAGGATGCAGTCTCAGGAATACAGAGTATATTGTTGGGGTTGTCATTTTTACTGGACATGAAACAAAGGTAATGATGAATACAATGAATGTTCCTTCCAAAAGAAGTACATTGGAGAGAAAGCTCGACAAGCTCATACTTGCTCTATTTGTGACTCTCTTTGTGATGTGTTTACTTGGAGCCATTGGCAGTGGCATCTTCGTAAACAACAAGTATTTCTACTTACGTCTTAATGCAGGTGATGAGGGTTCTGGGCAGTTCAACCCGGGGAATAGAATTTTGGTTATTACTTTGACCATGTTTACCCTCATCACTTTATACTCGACAATCATCCCGATTTCACTTTATGTGTCAATAGAGATGATCAAATTTATTCAGTGCACTCAGTTTATCAACAAAGATTTGCGCATGTACCACAGTGAGACCAATACCCCTGCATTAGCCAGAACTTCCAATTTAAATGAAGAACTTGGGCAGGTGGAATACATCTTCTCTGACAAAACTGGGACCCTAACAAGAAACTTAATGGAGTTCTTCAAGTGTTCAATTGGAGGCGAGATCTATGGAAATGGCATCACTGAAATTGAGAGAGGATTAGCTGAACGCAATGGCATTAAAATTCAGGCAGATAATAGATCAGACAATGCAGTGCAAGAAAAGGGTTTTAATTTTGATGATGCAAGGCTTATGCGTGGAGCCTGGAGGAATGAGCCCAATCCTGATAGTTGCAAGGAATTTTTCAGATGCCTTGCTATATGCCATACTGTACTTCCTGAGGGTGATGAGTCCCCTGAAAAGATCAGATATCAAGCTGCATCACCTGATGAGGCTGCTTTGGTCATTGCTGCAAAGAACTTTGGTTTCTTCTTTTACAGGCGCACACCTACCTCAATATATGTTCGTGAATCTCATGTTGAGAAGATGGGTATAATTCAGGATATGTCTTATGAGATTTTGAATGTGCTTGAGTTTAACAGTACAAGGAAGCGTCAGTCTGTTGTATGTCGTTATCCAGATGGGAGACTTTTGTTGTACTGTAAGGGTGCTGATAGTGTAATCTATGAGAGATTGGCTGATGGTTACAATGATATAAAGAAAGTGACTAGGGGTCATTTGGAACAATTTGGATCTGCTGGACTACGTACTTTATGCCTAGCCTACAAAGAATTGCCTCCTGATGTGTATGAAAGCTGGAATGAGAAGTTCATCCAAGCCAAGTCATCTCTTCGTGATCGTGAAAAGAAGTTAGATGAGGTGGCAGAACTTATAGAAAATGGTCTTATTTTGATTGGTTGCACTGCCATAGAAGACAAGCTTCAAGAAGGAGTACCGACTACTATAGAGACTCTTCAAAGGGCTGGCATTAAAATTTGGGTTCTTACAGGAGATAAGATTGAAACAGCCATAAATATTGCCTATGCATGCAATCTAATAAACAATGAGATGAAGCAATTTGTCATCAGTTCTGAAACTGATGTAATTAGAGAAGCTGAGGAAAGGGGTGACCAAGTGGAAATTGCACGTGTCACTAAGGAAGAAGTGAAAAAAGAGCTGAAGAAGTGCTTGGAGGAAGCCCAGAGCTACCTTTCATCATTATCTGGACCTAAATTAGCCCTTGTTATTGATGGAAAATGTCTAATGTATGCATTAGATCCTAGTTTAAGAGTGACGCTGCTGAATTTGAGTTTAAATTGTCATGCAGTTGTTTGCTGCCGAGTTTCTCCTTTACAGAAAGCACAGGTTACAAGTTTGGTAAAAAAAGGTGCACGGAAAATAACACTTAGTATTGGCGATGGGGCCAATGATGTTAGCATGATTCAGGCTGCTCATGTTGGTGTTGGCATAAGCGGGCTGGAGGGGATGCAAGCAGTAATGGCTAGTGATTTTGCCATTGCACAGTTTCGTTACCTTGCAGATTTATTACTTGTTCATGGCCGGTGGTCATATCTTCGAATATGCAAGGTGGTGACATACTTCTTTTACAAGAATCTCACATTCACTCTCACTCAGTTTTGGTTTACTTTTCAAACTGGGTTTTCTGGTCAGAGGTTCTATGATGATTGGTTTCAGTCATTATATAACGTGATCTTCACGGCCCTACCAGTGATCATTGTTGGACTATTTGACAAGGATGTCAGTGCATCTCTTTCCGTGAAGTACCCTGAGCTTTACATGGAGGGGATAAGAAATGTCTTCTTCAAATGGAGAGTTGTGGCAATATGGGCCTTTTTTTCTGTTTATCAGTCTCTAATTTTGTACTATTTTGTTAGTACAGCAAGTTTAAGTGCTAAAAATTCAGCTGGCCTAACATTCGGAGTTTGGGATGTCAGTACAATGGCGTTCACATGTGTTGTAATAACTGTGAACTTGCGGCTTCTTATGATTTGTAACTCAATTACAAAGTGGCACATTATTAGCGTTGGTGGAAGTATATTAGCATGGTTTATTTTTGCTTTCGTATATTGCGCCATCATTGGAAAGGGGAATACTTATTTTGTCATATTTGTCTTGATGAGCACGATCTATTTCTATCTCACAATTATTTTAGTACCAGTTGTTGCACTTCTTGGTGACTTTGTTTATCAAGGGGTTCAAAGATGGTTCTTCCCCTATGACTATCAGATCGTTCAGGAAATGCATCGACACGAAGTGGAGGGTACTAGCAGGGCACAACTGCTGGAGATAGAGAACCAGCTTACACCAGCTGAGGCAAGAAGCTATGCAATATCTCAACTCCCTCGCGAGATCTCGAAGCACACCGGGTTTGCTTTTGATTCGCCCGGGTATGAGTCCTTTTTTGCCGCACAGTTAGGCGTATATGCCCCACAAAAGGCATGGGATGTTGCCAGACGAGCTAGTGCCAAGTCAAAGCCCAAATTTGGAAGATATCCTACTTCGTCTTCTTGGGAAGTTGAAGCCAGAGCAGGTTGGCAGGATTGCGTAGATGTACATCACACGATTTTGCTTTTTCATATGACAAATTCTTCATTTGATACATATTTGCAAGCTCAGATCATACTTTCTGTCGTTAGAGGGTTAAATACAGCACATAAAAGACCATATTATGGCCACTTTATTCTCGTTCTGATTAAGTACTATAATGGGTGTCTATTTCACACCGTTCAGAAAGATTTCACTGCTCAGACTGGTGATCCAACTGGAACTAGGAGTGGTGGTGATTCAGTTTACAAATTTCTCTATGGTGATCAAGCTCGCTTTTTTAGTGATGAGATTCATATTGATTTAAAGCATTCTAAGACTGGTACAGTTGCCATGGCTAGTGCTGGAGAGAACCTGAATGCTTCCCAGGTTTTTGGCGAGGTAGCTGAAGGACTTGACACTTTGACTAGAATAAATGAGGCTTACGTGGATGAGAGAGGGGGACCTTATAAAAATATCTGAATCAAGCACACTTACATCTTAGATGATCCTTTTGACGATCCTCCTCAGCTAGCTGAGTTCATTCCTGACGCTTCACCAGAAGGAAAGCCAAAAGATGAGATTCTTGATGAAGTGCGGCTTGAAGATGATTGGGTGCCCATGGATGAACAATTAGATGCAGCAGAGCTTGAAGGGGTTATTAGGTCAAAGGAAGCACATTCTAGGGCCGTTGTACTTGAGAGTATTGGAGATATTCCTGATGCTGAGATCAAGCCTCCTGACAACGTGCTATTTGTTTGTAAATTGAACCCGGTTACTGAGGATGAGGACTTGCATACTATATTTTCACGCTTTGGGACTGTTGTGTCGGCTGAAATTATCCGTGATCACAAGACTAGTGACAGTTTATGCTATGCTTTCATAGAGTTTGAGGGCAAGCAGGCATGTGAAGAAGCATATTTTAAGATGGATAATGCTTTGATTGATGACCGAAGGGTACATGTGGATTTCAGTCAGAGTGTAGCGAAACTATGGTCACAATATAGGCGCAACGCTCAAACTGGTAAGGGCTGCTTCAAATGTGGTTCTTCAGATCATATGGCCAAAGATTGCACTGAGGATGCTAAGAATAACCAAACGACAAAATACATCTTGAAGGACAACAATGCCCAACGTGGTGGCGTTGATGCAAGGTATGAAATGGTCTTTGATGGAGACGGTGAAGATAGTCCGAGGCAAGGAAAGGGACACAGAAAGCATGACAAGGTTGACCCAATTGAGAGAAAAAGTATGCATAGGGGTCACAGGGATCAAGACAACCGAGATAGGAAGAGATACGATGATGATAGCCATTCGAAGAGAGGGACCGGTGCAGATTATAGGAGAAAAACGAATTCTAGCCATGTGGAGAGAAGGGATGACAGGGACAAGGAGTATAGCAGAGATAGGGAGAAGAGAAAGAGGGATGGTTCAGCTGAAGATGGCCATGAAGACAGGAGGAGAATGGACGACAGAGATCCTAGGACGAAACATGAAGACCCAGGCAGGCAAGACTCGAAGAATGAGTCCAGAGAAAGAAAAAGAAATGCTGATGACGATGAAGATTACGGACGTCGAAGGGAAGAACGTGGGCAGAGAAGAAAAGTTGTGGAATTTGACGATGATCGACATCGTAGTGACAGGAGATGA 5370 0.4222 MRGWDRMRRSSSSSRSSLGMGSNPTRNLPNRIPSSRAVQLGRVQPQAPGHRTVFCNDRDTNLPVRFKGNSISTTKYNLFTFLPKALFEQFRRVANLYFLTISIMSTTPISPVSPITNVAPLSLVLLISLIKEAFEDWKRFQNDLAVNNTLIDVLQGQKWVSIPWKRLQVGDVVRVKQDGFFPADLLFLASTNPDGVCYIETSNLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNLIIQKQTLPLSPNQLLLRGCSLRNTEYIVGVVIFTGHETKVMMNTMNVPSKRSTLERKLDKLILALFVTLFVMCLLGAIGSGIFVNNKYFYLRLNAGDEGSGQFNPGNRILVITLTMFTLITLYSTIIPISLYVSIEMIKFIQCTQFINKDLRMYHSETNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGNGITEIERGLAERNGIKIQADNRSDNAVQEKGFNFDDARLMRGAWRNEPNPDSCKEFFRCLAICHTVLPEGDESPEKIRYQAASPDEAALVIAAKNFGFFFYRRTPTSIYVRESHVEKMGIIQDMSYEILNVLEFNSTRKRQSVVCRYPDGRLLLYCKGADSVIYERLADGYNDIKKVTRGHLEQFGSAGLRTLCLAYKELPPDVYESWNEKFIQAKSSLRDREKKLDEVAELIENGLILIGCTAIEDKLQEGVPTTIETLQRAGIKIWVLTGDKIETAINIAYACNLINNEMKQFVISSETDVIREAEERGDQVEIARVTKEEVKKELKKCLEEAQSYLSSLSGPKLALVIDGKCLMYALDPSLRVTLLNLSLNCHAVVCCRVSPLQKAQVTSLVKKGARKITLSIGDGANDVSMIQAAHVGVGISGLEGMQAVMASDFAIAQFRYLADLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIIVGLFDKDVSASLSVKYPELYMEGIRNVFFKWRVVAIWAFFSVYQSLILYYFVSTASLSAKNSAGLTFGVWDVSTMAFTCVVITVNLRLLMICNSITKWHIISVGGSILAWFIFAFVYCAIIGKGNTYFVIFVLMSTIYFYLTIILVPVVALLGDFVYQGVQRWFFPYDYQIVQEMHRHEVEGTSRAQLLEIENQLTPAEARSYAISQLPREISKHTGFAFDSPGYESFFAAQLGVYAPQKAWDVARRASAKSKPKFGRYPTSSSWEVEARAGWQDCVDVHHTILLFHMTNSSFDTYLQAQIILSVVRGLNTAHKRPYYGHFILVLIKYYNGCLFHTVQKDFTAQTGDPTGTRSGGDSVYKFLYGDQARFFSDEIHIDLKHSKTGTVAMASAGENLNASQVFGEVAEGLDTLTRINEAYVDERGGPYKNIXIKHTYILDDPFDDPPQLAEFIPDASPEGKPKDEILDEVRLEDDWVPMDEQLDAAELEGVIRSKEAHSRAVVLESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGTVVSAEIIRDHKTSDSLCYAFIEFEGKQACEEAYFKMDNALIDDRRVHVDFSQSVAKLWSQYRRNAQTGKGCFKCGSSDHMAKDCTEDAKNNQTTKYILKDNNAQRGGVDARYEMVFDGDGEDSPRQGKGHRKHDKVDPIERKSMHRGHRDQDNRDRKRYDDDSHSKRGTGADYRRKTNSSHVERRDDRDKEYSRDREKRKRDGSAEDGHEDRRRMDDRDPRTKHEDPGRQDSKNESRERKRNADDDEDYGRRREERGQRRKVVEFDDDRHRSDRR 1789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1205 1789 Gene3D - 693 903 IPR023214 -
Lele50g1205 1789 SUPERFAMILY Calcium ATPase, transmembrane domain M 65 1137 IPR023298 -
Lele50g1205 1789 SUPERFAMILY RNA-binding domain, RBD 1475 1581 IPR035979 GO:0003676
Lele50g1205 1789 Gene3D - 131 296 - -
Lele50g1205 1789 MobiDBLite consensus disorder prediction 1623 1789 - -
Lele50g1205 1789 SUPERFAMILY Cyclophilin-like 1294 1424 IPR029000 -
Lele50g1205 1789 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 836 942 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lele50g1205 1789 ProSitePatterns E1-E2 ATPases phosphorylation site. 433 439 IPR018303 -
Lele50g1205 1789 Pfam Zinc knuckle 1584 1600 IPR001878 GO:0003676|GO:0008270
Lele50g1205 1789 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 1260 1407 IPR002130 GO:0000413|GO:0003755
Lele50g1205 1789 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 1295 1405 IPR002130 GO:0000413|GO:0003755
Lele50g1205 1789 MobiDBLite consensus disorder prediction 10 41 - -
Lele50g1205 1789 Pfam Phospholipid-translocating ATPase N-terminal 53 117 IPR032631 -
Lele50g1205 1789 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 437 710 IPR023299 GO:0000166
Lele50g1205 1789 Coils Coil 771 798 - -
Lele50g1205 1789 Gene3D - 565 684 IPR023299 GO:0000166
Lele50g1205 1789 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1489 1567 IPR000504 GO:0003723
Lele50g1205 1789 CDD RRM_PPIL4 1486 1568 - -
Lele50g1205 1789 SFLD Haloacid Dehalogenase 413 914 - -
Lele50g1205 1789 SFLD p-type atpase 413 914 IPR044492 -
Lele50g1205 1789 Gene3D - 1291 1418 IPR029000 -
Lele50g1205 1789 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 44 1186 - -
Lele50g1205 1789 FunFam Phospholipid-transporting ATPase 540 695 - -
Lele50g1205 1789 SMART rrm1_1 1490 1563 IPR000504 GO:0003723
Lele50g1205 1789 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1491 1561 IPR000504 GO:0003723
Lele50g1205 1789 FunFam Peptidyl-prolyl cis-trans isomerase 1428 1569 - -
Lele50g1205 1789 MobiDBLite consensus disorder prediction 1626 1789 - -
Lele50g1205 1789 Gene3D - 1577 1649 - -
Lele50g1205 1789 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 66 1145 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Lele50g1205 1789 MobiDBLite consensus disorder prediction 1 42 - -
Lele50g1205 1789 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Lele50g1205 1789 PRINTS P-type cation-transporting ATPase superfamily signature 431 445 - -
Lele50g1205 1789 Gene3D - 1449 1570 IPR012677 -
Lele50g1205 1789 ProSiteProfiles Zinc finger CCHC-type profile. 1585 1600 IPR001878 GO:0003676|GO:0008270
Lele50g1205 1789 SUPERFAMILY HAD-like 419 905 IPR036412 -
Lele50g1205 1789 FunFam Phospholipid-transporting ATPase 696 903 - -
Lele50g1205 1789 SMART c2hcfinal6 1584 1600 IPR001878 GO:0003676|GO:0008270
Lele50g1205 1789 Pfam E1-E2 ATPase 152 387 - -
Lele50g1205 1789 Pfam Phospholipid-translocating P-type ATPase C-terminal 891 1137 IPR032630 -
Lele50g1205 1789 CDD P-type_ATPase_APLT_Dnf-like 68 1023 - -
Lele50g1205 1789 FunFam Phospholipid-transporting ATPase 127 296 - -
Lele50g1205 1789 Pfam Cation transport ATPase (P-type) 529 623 - -
Lele50g1205 1789 SUPERFAMILY Calcium ATPase, transduction domain A 149 292 IPR008250 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1205 Lele-ChrLele50 8355237 8392729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1205 31 1226 Primary Pumps ATPases AT1G59820 79.000 0.0 2026