Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1204 ATGGACCAACAAGTTCTCGTGGATGAAAACTTTCCACTTTTCTCCAAGTCTCGTAAACCCTCAAAAAACCACTTGCCGGCTGCCCCAACTGCTACAGCCACCAGTGTTGACATTAACTTTGACAGCCAACTCCTGGGAAAGTCAGATGACGCAGATCTTGATTTCACCAATCCTACTACTTTTGTGGAGCTAGGACTTGCCGAATGGGCTGTGAAGACTTGCAAGGAGCTCGCAATGCGCAAGCCTCGACAAGTCCAATTACATTGCATCCCGAAGATTCTAGATGGCTGCCATGTGCTTGGCATTGATGAGACAGGAAGTGGTAAGACTGCAGCATTTGCTCTTCCAATCCTTCACCGACTGGGGGAGCATCCTTTTGGGGTTTTTGCTTTGGTTTTGACACCAACAAGGGAGTTGGCATATCAACTAGCAGAGCAATTTAGGGCATTGGGTTCATGCTTGCATGTGCGGATAGCTGTGGTGGTGGGAGGGATGGATATGTTGCAACAAGCCAAGGCTTTAACATCCAGGCCTCATGTTGTGATTGCCACACCAGGAAGGATCAAGGTTTTGCTTGAGGATAATCCTGATATTCCTCCAGTTTTTTCTAGAACTAAGTTCCTTGTCTTGGATGAAGCAGATCGAGTTCTTGATGTCGGCTTTCAGGAGGATTTGAAATTGATCTTTCAGTGCTTACCAGAAAATCGGCAAAACCTATTTTTTTCTGCAACTACAACAAGTAATCTGCAGAAGCTGCGTGAGCGTTACCAAGACAAGCTCTATGCTTATGAGGCCTATCAAGGCCTGAAAACAGTTGAGACACTTAAGCAACAAATTATATTTGTCCCCAACAAAGTGAAGGAGGTTTATTTAATGCATTTATTGTCCAAAGTGAAAGATATGGGCATTCGATCTGCCATTATTTTTTTCTCTACATGCAGAGATTGTCATCGTCTAAGTTTAATGCTAGAAGTACTCGATCAAGAAGCTGCGGCTCTCTATTCATTCAAATCACAGACTCAGAGACTTGAAGCACTTAATCAATTTAAATCGGGAAAGGTTTCTATACTGCTTGCAACTGATGTTGCCAGCCGAGGTTTGGACATTCCTACAGTTGATCTAGTAATAAATTATGATGTCCCAAGGTTTCCGAGGGATTATGTCCATCGTGTTGGTCGAACTGCAAGAGCAGGTAGAGGAGGACTGGCTGTGAGCATTGTTACCCAGAATGACATTCATCTCATTCATGAAGTAGAAGCTCTTCTTGAAAGGCAACTTGAGTTGGTTGAATACAAAGAGAATGAGGTGCTTTCTCTGATGAAAAAGGTTTTCAGTGCTAAAAATTTTGCCGAGATGAAAATGTTGGACGATGGCTTTGAGGAGAAAGCAAAAGAGCGGCAAAAGCAGAAACTGAAAATGTTAGAAGAAAAAGGATTGTTAAAGAAAAGGAGCAAAAAGAGAACAAATAAAGGCATCAAGGAAGAAGGGAAGTTTATAAAGAGGAAGTGGAAACCTTACCAGATAAAAAAGGATCACTGA 1539 0.4256 MDQQVLVDENFPLFSKSRKPSKNHLPAAPTATATSVDINFDSQLLGKSDDADLDFTNPTTFVELGLAEWAVKTCKELAMRKPRQVQLHCIPKILDGCHVLGIDETGSGKTAAFALPILHRLGEHPFGVFALVLTPTRELAYQLAEQFRALGSCLHVRIAVVVGGMDMLQQAKALTSRPHVVIATPGRIKVLLEDNPDIPPVFSRTKFLVLDEADRVLDVGFQEDLKLIFQCLPENRQNLFFSATTTSNLQKLRERYQDKLYAYEAYQGLKTVETLKQQIIFVPNKVKEVYLMHLLSKVKDMGIRSAIIFFSTCRDCHRLSLMLEVLDQEAAALYSFKSQTQRLEALNQFKSGKVSILLATDVASRGLDIPTVDLVINYDVPRFPRDYVHRVGRTARAGRGGLAVSIVTQNDIHLIHEVEALLERQLELVEYKENEVLSLMKKVFSAKNFAEMKMLDDGFEEKAKERQKQKLKMLEEKGLLKKRSKKRTNKGIKEEGKFIKRKWKPYQIKKDH 512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1204 512 MobiDBLite consensus disorder prediction 466 482 - -
Lele50g1204 512 Gene3D - 270 502 IPR027417 -
Lele50g1204 512 CDD DEADc_DDX49 61 264 - -
Lele50g1204 512 Pfam Helicase conserved C-terminal domain 303 398 IPR001650 -
Lele50g1204 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 127 415 IPR027417 -
Lele50g1204 512 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 90 263 IPR014001 -
Lele50g1204 512 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 48 488 - -
Lele50g1204 512 SMART ultradead3 78 278 IPR014001 -
Lele50g1204 512 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 290 437 IPR001650 -
Lele50g1204 512 Pfam DEAD/DEAH box helicase 84 252 IPR011545 GO:0003676|GO:0005524
Lele50g1204 512 SMART helicmild6 317 398 IPR001650 -
Lele50g1204 512 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 209 217 IPR000629 -
Lele50g1204 512 CDD SF2_C_DEAD 275 407 - -
Lele50g1204 512 MobiDBLite consensus disorder prediction 466 496 - -
Lele50g1204 512 Gene3D - 50 262 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1204 Lele-ChrLele50 8349160 8354473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1204 60 415 Eukaryotic Initiation Factors Gene Family AT3G13920 32.782 3.17e-53 184