Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1187 ATGAAGAGGTCTAGAGACGATGGTTATGTGAGCTCTCAACTCAAACGGCCCATGGTTTCTTCACGAACGGAAGCCCCGGGGCAACCCCAGATGATAGGTGGAGGTGCTCAGAAACTAACAACTAATGATGCCTTGCTCTATCTCAAGGCTGTCAAGGAAATGTTCCATGACAAGAGGGAAAAATATGATGACTTTCTGGAAGTAATGAAAAATTTCAAGGCACAAAGAATTGATACTGCTGGTGTCATAGCAAGAGTGAAGGAACTGTTTAAAGGGCACAAGGATCTAATTTTGGGATTCAACACCTTCTTGCCAAAAGGATACGAAATCACACTTCCACTGGAGGACGAACAACCTCCTCAAAAGAAGCCGGTTGAATTTGAAGAAGCTATAAATTTTGTGAATAAAATTAAGGCTCGGTTTCAGGGCGATGATCATGTTTACAAGTCTTTTCTAGACATATTGAATATGTACAGAAAGGAAAACAAGTCTATCACTGAGGTCTATCATGAGGTTGCCATTCTTTTCCAAGACCACCAAGACCTGCTTGTTGAGTTCACTCACTTTCTTCCAGATGCTTCAGCAGCAGCTTCTGCTCATTATGCTCAATCTGCTCGGAACTCTTTGCTTCGGCACAGCATCTCGGCAATGCCAGCAGCGCATCACATTGACAAGAGGGAAAGGACCATAACCTTACATGGCCGTGACCATAGTGTTGATCATCCTGATCCAGATGACAGAGGTTTAATGAGGAGGCGTGGTGAGAAGGAAAAGGACCGTAGGGAAGATAGAGACAGGAAGGAGCGGGAACAGGATGATAGAGATTATGAGCATGGTAATAGTCAGGACTACAATATGCGGAATTTTCCCCACAAACCAAAACATGGTGGCAGGGGTGATGATTTTGGCTCTGAACCTTTGCATCAAGGAGGTGATGCTGATGAACATTTTGATCTGCGCAGTATGTCATCACCTTGTGATGATAAAAGCTCTGTGAAAAGTATGTATAGTCAAGAGTTTGCTTTCTGTGATAAAGTCAAGGAGAAATTACGGAACCCTGATGATTATCAAGAATTTTTGAAGTGCCTGCATATCTATTGCAGGGAAATAATTACACGACAAGAATTGCAGTCATTGGTGGGTGATTTACTAGGAAAATATCCTGACCTTATGGAGGGGTTTAATGAATTTTTGGCAAGATGTGAGAAGAATGATGGATTCCTTGCTGGTGTAATGAATAAAAAATCCTTATGGAACGAAGGAAATGCATCAAAATCGGTGAAGGCAGAAGACCGGGATAGAGATAGAGATCGTGGTCGGGATGATGAGGTTAAAGAAAGGGATCGTGAATATGGAGAAAGGGATAGATCTGCTACCATTGCCAACAAGGATGTTTCAGGTTCTAGGATGTCTATATTATCCTCCAAGGATAAGTATATGTACAAACCTATAAATGAGTTGGACCTATCTAACTGTGAGCGATGCACTCCTAGTTACCGGCTCCTACCAAAAAATTACACAATACCCATGGTTAGCCAGAGAACAGAGCTTGGTGCTGATGTAGTGAATGATCATTGGGTGTCTGTGACATCTGGGAGTGAAGACTATTCTTTTAAACACATGCGCAAAAATCAGTATGAAGAGAGTTTGTTTAGATGTGAAGATGACAGATTTGAGCTTGATATGCTGTTAGAGTCTGTGAATACGACAACAAAGCGAGTAGAAGAGCTCTTAGAAAAGATCAATAATAATATAATCAAAGCAGAAAGTCCAATCCGAATTGAGGAGCACTTAACAGCTTTAAATCTAAGGTGCATTGAACGTTTATATGGTGACCATGGGCTTGATGTAATGGAAGTGTTGAGAAAGAATGCACCTTTAGCTTTGCCAGTTATACTGACCCGCTTGAAGCAGAAACAGGAAGAGTGGGCAAGGTGTCGTGATGATTTTAATAAAGTTTGGGCTGAAATATATGCCAAGAACTATCACAAATCCCTGGATCATCGGAGCTTCTACTTTAAGCAACAAGATATGAAAAGCTTGAGCACTAAAGCCTTGTTGGCAGAAGTTAAAGAACTTAGTGAGAAGAAACGTAAAGAAGACGATGTTCTTCTTGCAATTGCTGCTGGAAATAGACGGGCCATTCTTCCAAATTTGGAATATGAGTTTTCTGATCCAGATATTCATGAAGATCTGTATCAGCTAATAAAATATTCATGTGGAGAAGTTTGCACAACTGATCAGTTAGATAAAGTTATGAAGATTTGGACCACATTTATAGAGCCCATGCTTGGTTTTCCTTCTCGGCCCCTAGGTGCTGAGGATACAGAAGAAGTTGTCAAGGCTAAGAACAATTCCGTCAAAAGTGGCACTGCAATTGTGGCAGAGAGTAATGGTAGTCCAGGTAGTGGTGCTACTGCTACCATAATGAATTCTAAACAATTAAGTACTTCTAGAAATGAGGATGAGAGTATTCCATTAGAACAGTCAAACTCTTGCAAAGCCTGGCAAATGAATGGAGATGGTAGGTTTAAACAAGACAACTGTGTTGATACAGACCATACAACTCGGAAGACTGAAACTTTGGGCAGCAGTACACAGCTTTGTAAAATGCAAGCTAGTGCATCCATGCCTGATGGAGGATCAGGAGTCAATAAGCAAGTGCATCCTAATGATCAGTTATTGAATGCTGGTGCCTCACTTGCCTCTGGCTTGGAGCACAGTAATGGAAGAGCATGCATTGATAATACATCAGGGCTTACGCAATCTAGACCCAGTGTGGAGGGAGGAGTTTATTTGCCTTCGTCAGAGGGTGGTAATTCTACTAGACTAGGAACATCTGCGAATGGGACCCTCACTGAAGGCACCAAAGTTCAAAGATACCAAGAAGAATCAGTTGGACACTTAAAAGTTGAAAGAGAAGAAGGCGAATTATCTCCAAATGGAGATTTTGAGGAGGATAACTTTGCGGTTTACAGAGATGCTGGTTTGGAGGCTATGAGTAAAGGAAAGGATGGTGGTATGATTCAACAATACCAAAATAGACATGGAGGAGAAGAAGTTTGTGGTGAAGTCAGAGGAGAAAATGATGCTGATGCTGATGATGAAGGTGAAGAAAGTCATCAAAGGTCATTAGAGGACAGTGAAAATGCTTCTGAAAATGGGAATGTTTCTGGCAGTGAGTCTGCTGATGGGGAGTGTTCTCGAGAAGAACATGAAGATGGTGAGCAAAAGGCCGAGAGTGAAGGTGAAGCTGAAGGGATGGCCGATGCCAATGATGTTGATGGAGATGGATCTGTATTGCCATTTTCAGAACGCTTTCTACTAACTGTAAAGCCTCTGGCAAAGTATTTTCCTGCAGCTTTGCATGAAAAAGAAGGGAATTCTCAGATTTTTTATGGAAACGACTCCATTTATGTGCTTTTCAGACTTCACCAGACATTATATGAGAGGATACAGTCAGCAAAGATCAACTCTTCATCTGCGGAAAGAAAGTGGAAGGCTTCAAATGAAACAAATTCTACTGATCAGTATGGCAGGTTCATGAATGCCCTTTACAGTTTACTGGATGGTTCTTCTGACAATACAAAATTTGAGGATGACTGCAGGGCTATTATTGGAACGCAATCTTATGTCTTATTCACTTTAGACAAGCTGATATATAAACTCGTTAAACAGCTTCAAGCTGTTGCAACTGATGAGATGGATAACAAGCTTCTCCAACTTTATACATATGAGAAATCAAGAAAACCAGGAAGATTTGTGGACAGAGTTTATCATGAAAATGCCCGCGTTCTTCTTCACGATGAGAACATATATCGAATTGAATGTTCATCTACGCCATCCCGATTATCTATTCAACTGATGGACTATGGACATGATAAGCCTGAATTGACCGCCGTGTCCATGGACCCAAATTTTTCAGCCTATCTGCATAGTGACTTCCTCTCTGTTGTTCCTGACAAAAAGGAAAAGTCAGGGATTTTCCTGAAGAGGAATAAACGCAGATACGCATGTAGTGATGAATATTCAAGCCAGGCCTTGGAAGGAGTACAAGTTAGTAATGGTCTGGAGTGTAAAATAGCTTGCAGTTCATCCAAGGTTTCATATGTTTTAGATACCGAAGACTTCTTGCAAAGTCCTCAAACAGTTGTTCAAGCAGAGCACATCGGTTTCGCAGATTGTTTCCCATTACATGATATTATCCATTTTGAGCTGAATAAGTAG 4227 0.4119 MKRSRDDGYVSSQLKRPMVSSRTEAPGQPQMIGGGAQKLTTNDALLYLKAVKEMFHDKREKYDDFLEVMKNFKAQRIDTAGVIARVKELFKGHKDLILGFNTFLPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKARFQGDDHVYKSFLDILNMYRKENKSITEVYHEVAILFQDHQDLLVEFTHFLPDASAAASAHYAQSARNSLLRHSISAMPAAHHIDKRERTITLHGRDHSVDHPDPDDRGLMRRRGEKEKDRREDRDRKEREQDDRDYEHGNSQDYNMRNFPHKPKHGGRGDDFGSEPLHQGGDADEHFDLRSMSSPCDDKSSVKSMYSQEFAFCDKVKEKLRNPDDYQEFLKCLHIYCREIITRQELQSLVGDLLGKYPDLMEGFNEFLARCEKNDGFLAGVMNKKSLWNEGNASKSVKAEDRDRDRDRGRDDEVKERDREYGERDRSATIANKDVSGSRMSILSSKDKYMYKPINELDLSNCERCTPSYRLLPKNYTIPMVSQRTELGADVVNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNTTTKRVEELLEKINNNIIKAESPIRIEEHLTALNLRCIERLYGDHGLDVMEVLRKNAPLALPVILTRLKQKQEEWARCRDDFNKVWAEIYAKNYHKSLDHRSFYFKQQDMKSLSTKALLAEVKELSEKKRKEDDVLLAIAAGNRRAILPNLEYEFSDPDIHEDLYQLIKYSCGEVCTTDQLDKVMKIWTTFIEPMLGFPSRPLGAEDTEEVVKAKNNSVKSGTAIVAESNGSPGSGATATIMNSKQLSTSRNEDESIPLEQSNSCKAWQMNGDGRFKQDNCVDTDHTTRKTETLGSSTQLCKMQASASMPDGGSGVNKQVHPNDQLLNAGASLASGLEHSNGRACIDNTSGLTQSRPSVEGGVYLPSSEGGNSTRLGTSANGTLTEGTKVQRYQEESVGHLKVEREEGELSPNGDFEEDNFAVYRDAGLEAMSKGKDGGMIQQYQNRHGGEEVCGEVRGENDADADDEGEESHQRSLEDSENASENGNVSGSESADGECSREEHEDGEQKAESEGEAEGMADANDVDGDGSVLPFSERFLLTVKPLAKYFPAALHEKEGNSQIFYGNDSIYVLFRLHQTLYERIQSAKINSSSAERKWKASNETNSTDQYGRFMNALYSLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQAVATDEMDNKLLQLYTYEKSRKPGRFVDRVYHENARVLLHDENIYRIECSSTPSRLSIQLMDYGHDKPELTAVSMDPNFSAYLHSDFLSVVPDKKEKSGIFLKRNKRRYACSDEYSSQALEGVQVSNGLECKIACSSSKVSYVLDTEDFLQSPQTVVQAEHIGFADCFPLHDIIHFELNK 1408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1187 1408 MobiDBLite consensus disorder prediction 288 323 - -
Lele50g1187 1408 MobiDBLite consensus disorder prediction 1 35 - -
Lele50g1187 1408 ProSiteProfiles PAH domain profile. 37 107 IPR003822 GO:0006355
Lele50g1187 1408 MobiDBLite consensus disorder prediction 422 460 - -
Lele50g1187 1408 Gene3D Paired amphipathic helix 121 194 IPR036600 GO:0006355
Lele50g1187 1408 MobiDBLite consensus disorder prediction 231 331 - -
Lele50g1187 1408 SUPERFAMILY PAH2 domain 37 106 IPR036600 GO:0006355
Lele50g1187 1408 ProSiteProfiles PAH domain profile. 332 401 IPR003822 GO:0006355
Lele50g1187 1408 Pfam Paired amphipathic helix repeat 146 190 IPR003822 GO:0006355
Lele50g1187 1408 Pfam Paired amphipathic helix repeat 354 398 IPR003822 GO:0006355
Lele50g1187 1408 Pfam Paired amphipathic helix repeat 60 104 IPR003822 GO:0006355
Lele50g1187 1408 SMART hdac_interact2seq4b 491 591 IPR013194 -
Lele50g1187 1408 Gene3D Paired amphipathic helix 330 403 IPR036600 GO:0006355
Lele50g1187 1408 ProSiteProfiles PAH domain profile. 123 193 IPR003822 GO:0006355
Lele50g1187 1408 Pfam C-terminal domain of Sin3a protein 1132 1378 IPR031693 -
Lele50g1187 1408 Coils Coil 560 584 - -
Lele50g1187 1408 MobiDBLite consensus disorder prediction 231 281 - -
Lele50g1187 1408 SUPERFAMILY PAH2 domain 119 192 IPR036600 GO:0006355
Lele50g1187 1408 Gene3D Paired amphipathic helix 43 105 IPR036600 GO:0006355
Lele50g1187 1408 FunFam Paired amphipathic helix protein Sin3 43 105 - -
Lele50g1187 1408 FunFam Paired amphipathic helix SIN3-like protein 122 193 - -
Lele50g1187 1408 PANTHER SIN3B-RELATED 37 1276 IPR039774 GO:0003714
Lele50g1187 1408 MobiDBLite consensus disorder prediction 425 460 - -
Lele50g1187 1408 FunFam Paired amphipathic helix protein SIN3 330 403 - -
Lele50g1187 1408 Pfam Sin3 family co-repressor 493 584 IPR013194 -
Lele50g1187 1408 MobiDBLite consensus disorder prediction 1028 1096 - -
Lele50g1187 1408 MobiDBLite consensus disorder prediction 1064 1085 - -
Lele50g1187 1408 SUPERFAMILY PAH2 domain 332 399 IPR036600 GO:0006355
Lele50g1187 1408 MobiDBLite consensus disorder prediction 1049 1063 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1187 Lele-ChrLele50 8155392 8165429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1187 33 142 WRKY Transcription Factor Family AT4G12020 50.909 2.60e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele50g1187 Sin3a_C 2.2e-59 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1187 50 8155392 8165429 Lele50g1187 50 8155392 8165429 ECH
Lele50g1187 50 8155392 8165429 Lele51g1115 51 7323959 7332733 hybridization
Lele50g1187 50 8155392 8165429 Lele52g1156 52 8060083 8069733 hybridization