Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1182 ATGTCTCGCACTTGCTCGCAGTGTGGCCACAATGGCCATAACTCCCGTACATGCATCCACGGCGGCGGCGGTGCCGCCGATGGTTCGTCTAAAGAGAACGGGATTATGCTGTTCGGCGTGCGACTCACTCAAGGGAACTCGTTCAGGAAGAGCGCTAGTATGACGAATCTGTCGCAGTTTGAGGCTCAAGCTCCGGATTCCAACGCCGTCGAGGCTGGTTACGCTTCCGACGACGTCGTTCATGCCTCCGGACGGAGTCGCGAGCGTAAGAGAGGTGTTCCCTGGTCGGAGGAAGAGCATAGGTTATTCCTATTGGGATTACAGAAAGTCGGAAAAGGAGATTGGAGAGGGATTTCTAAGAACTTCGTCAAAACTCGGACGCCGACTCAGGTAGCGAGTCATGCTCAGAAGTACTTCCTTCGTCGCCACAACCAGAATCGGAGACGCCGTAGATCTAGTCTCTTCGACATCACCACCGATACTGTGATGGAATCCTCTGTAATGGAAGAAGAACAAGTTCACCAAGAAACGGCGATCCCGCCCACGCATCCACAGTTATATTACGGAGGCTTTCCGAGCTTAACTTTTCAGACGAAGGTGATGGCAGGAGAGAGACCATCGAAGCCTATTAGGCCGATGCCAATCCTACCAGTCCCTCCGTCATCAAAAATGGCCACTCTGAATTTGAAAGACAAAGCTCCAATAGATCCCCTGCCATTATCGCTAAAGCTGCCAACATCGCCGTCAACATCAAGTGAGAAATCACCGACAACAAGCCAGTCAGCGCCATCACCGGATTTTCAGGCTATGTCCGGCAAGTTCAGCGGCGGTGGAGATAGCATAATCAGCGTGGCTTGA 858 0.5245 MSRTCSQCGHNGHNSRTCIHGGGGAADGSSKENGIMLFGVRLTQGNSFRKSASMTNLSQFEAQAPDSNAVEAGYASDDVVHASGRSRERKRGVPWSEEEHRLFLLGLQKVGKGDWRGISKNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSVMEEEQVHQETAIPPTHPQLYYGGFPSLTFQTKVMAGERPSKPIRPMPILPVPPSSKMATLNLKDKAPIDPLPLSLKLPTSPSTSSEKSPTTSQSAPSPDFQAMSGKFSGGGDSIISVA 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1182 285 SMART sant 91 141 IPR001005 -
Lele50g1182 285 Pfam Myb-like DNA-binding domain 94 139 IPR001005 -
Lele50g1182 285 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 90 141 IPR006447 GO:0003677
Lele50g1182 285 MobiDBLite consensus disorder prediction 205 224 - -
Lele50g1182 285 MobiDBLite consensus disorder prediction 243 268 - -
Lele50g1182 285 PANTHER TRANSCRIPTION FACTOR KUA1 1 249 - -
Lele50g1182 285 MobiDBLite consensus disorder prediction 1 25 - -
Lele50g1182 285 Gene3D - 93 144 - -
Lele50g1182 285 CDD SANT 94 139 IPR001005 -
Lele50g1182 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 143 IPR017930 -
Lele50g1182 285 MobiDBLite consensus disorder prediction 236 285 - -
Lele50g1182 285 ProSiteProfiles Myb-like domain profile. 87 139 IPR001005 -
Lele50g1182 285 ProSiteProfiles SANT domain profile. 90 143 IPR017884 -
Lele50g1182 285 ProSiteProfiles Zinc finger CCHC-type profile. 5 18 IPR001878 GO:0003676|GO:0008270
Lele50g1182 285 SUPERFAMILY Homeodomain-like 89 142 IPR009057 -
Lele50g1182 285 FunFam transcription factor MYB1R1 93 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1182 Lele-ChrLele50 8098781 8099853 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele50g1182 Myb_DNA-binding 9.7e-11 CL0123