Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1163 ATGCCGGCGCATAGATCGAAATCGGAGAAGCATGATGCTGCGAAGCAGCCTCGTCGGGATCCCTATGAGGTTCTCGGCGTCTCACTCAACTCGACAGATCAGGAAATCAAAACAGCTTACCGAAAAATGGCGCTCAAATACCATCCTGACAAGAATGCTAACGATCCTGAAGCGGCTGATATGTTTAAAGAGGTCACCTTTTCATACAATATCTTGTCAGATCCAGACAAACGGCGTCAATATGACTCAGCTGGTTTTGAGGCTGTTGAATCAGATAGCCAAGAATTGGAGTTGGATCTTTCAAGTTTAGGTGCTGTGAATACAATGTTTGCTGCACTTTTTAGTAAACTTGGCGTGCCAATTAAGACAACTGTATCAGCAACTGTTTTGGAAGAGGCACTTAATGGTGTGGTGACTATTCGTCCACTTCCCTTAGGGCATCCTATATCTAGAAGGGTTGAGAAGCAATCTGCTCACTTCTATTCAGTTACAATAACAGAAGAGGAAGCGCGGGCTGGTTTTGTTTGTCGGGTGCAATCATCTGACAAAAGCAAGTTTAAGTTATTATATTTTGACCAAGAAGAGAATGGCGGATTGAGTCTTGCACTCCAGGAAGATAGTGGAAAAACAGGAAAGGTTACCTCTGCTGGAATGTATTTTCTCGGTTTTCCTGTTTATCGGCTTGATCAAACAACAAACTCATTAGCTGCTGCCAAGGATCCTGATACATCATTTTTCAGAAAACTTGATGGTTTCCAACCTTGTGAACTAACAGAATTGAAGGCTGGTACCCATGTATTTGCTGTTTATGGCGACAATTTCTTCAAGAGTGCAAGCTATACGGTAGAAGCTCTATGTGCTGCACCTTTCAATCAAGAAAAAGAGAGCCTCAGGAACATAGAAGCTCAAATCTTAACTAAACGAGCAGAACTATGTAAATTTGAGAGCGAATACCGAGAGGTTCTGGCACAATTTACAGAGATGACAAACAGATATGCACAAGAAATGCAAGTGATTGATGAACTACTGAAGCAAAGAAATGAGATACATGCATCATATACTATTGCTCCGTTAAAACGTAGTACAAGTAAGAGTAGGAGTAAAAGTTCTTCCAAGGAGGCGACAGAAGAGAGCCAACCAAGAGAGAAAAGATTTACAAGAGGCCGATCGAAGAAGAAATGGTATAACATTCACTTGAGAGTTGACAAGAGAAAGGCTTGCTGA 1224 0.4175 MPAHRSKSEKHDAAKQPRRDPYEVLGVSLNSTDQEIKTAYRKMALKYHPDKNANDPEAADMFKEVTFSYNILSDPDKRRQYDSAGFEAVESDSQELELDLSSLGAVNTMFAALFSKLGVPIKTTVSATVLEEALNGVVTIRPLPLGHPISRRVEKQSAHFYSVTITEEEARAGFVCRVQSSDKSKFKLLYFDQEENGGLSLALQEDSGKTGKVTSAGMYFLGFPVYRLDQTTNSLAAAKDPDTSFFRKLDGFQPCELTELKAGTHVFAVYGDNFFKSASYTVEALCAAPFNQEKESLRNIEAQILTKRAELCKFESEYREVLAQFTEMTNRYAQEMQVIDELLKQRNEIHASYTIAPLKRSTSKSRSKSSSKEATEESQPREKRFTRGRSKKKWYNIHLRVDKRKAC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1163 407 ProSiteProfiles dnaJ domain profile. 20 85 IPR001623 -
Lele50g1163 407 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN) 5 406 - -
Lele50g1163 407 ProSitePatterns Nt-dnaJ domain signature. 62 81 IPR018253 -
Lele50g1163 407 SUPERFAMILY Chaperone J-domain 17 89 IPR036869 -
Lele50g1163 407 FunFam Chaperone protein dnaJ 16 4 102 - -
Lele50g1163 407 MobiDBLite consensus disorder prediction 366 384 - -
Lele50g1163 407 MobiDBLite consensus disorder prediction 1 22 - -
Lele50g1163 407 PRINTS DnaJ domain signature 77 96 IPR001623 -
Lele50g1163 407 PRINTS DnaJ domain signature 22 40 IPR001623 -
Lele50g1163 407 PRINTS DnaJ domain signature 40 55 IPR001623 -
Lele50g1163 407 PRINTS DnaJ domain signature 57 77 IPR001623 -
Lele50g1163 407 Pfam DnaJ domain 20 82 IPR001623 -
Lele50g1163 407 MobiDBLite consensus disorder prediction 1 19 - -
Lele50g1163 407 CDD DnaJ 20 74 IPR001623 -
Lele50g1163 407 SMART dnaj_3 19 77 IPR001623 -
Lele50g1163 407 MobiDBLite consensus disorder prediction 358 390 - -
Lele50g1163 407 Gene3D DnaJ domain 4 103 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1163 Lele-ChrLele50 7922944 7926277 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1163 13 83 C2H2 Transcription Factor Family AT1G74250 40.789 3.64e-11 63.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1163 50 7922944 7926277 Lele50g1163 50 7922944 7926277 ECH
Lele50g1163 50 7922944 7926277 Lele51g1093 51 7119714 7123086 hybridization
Lele50g1163 50 7922944 7926277 Lele52g1127 52 7800071 7803415 hybridization