Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1162 ATGGAAAAGCAAAGTTTTCTCTGTGATGTTTCTTCAACATGGGAAGTTTCAGAGAATGAACAATCCATGGAGAAGAGGCTGAAGCTATTTGGGTTTGAGTTAAATTCATGTAGCAATAACAAAACCAGTTCAAATGAAGGAGATGAAAGTGTGAACTCTTCAAATTCAGTGCTGTCTTCGTCATCAGGATCTGGTGCAGGTCAAGAGAAGATCATCGTCGTCACGGAGTCATCTTCAACAGAAAACCCTAATTCTTCCTCAGAGGAGCAGAGAAAGTTCCAGTGCCAATACTGCTTCAAGGAGTTTGCAAACTCACAGGCTTTAGGAGGCCATCAAAATGCTCATAAGAAAGAGAGAATGAAGAAGAAGAGGCTTCAGCTTCAAGCCAGGAAGGCCAGCCTCAATTTCTACCTTCAACAACGATGTTTTCAAACCAGTAATAATAATAATAATAATTATTATTATTATCAGTATAATAATAATAATTCTTCTTCTTCTTCTTGGTTCTATGATCCTTCTTCGTATAACAACTCAGCTGAGTTGTTCAATATTCATGAAGGATCACAGATTAGCTTCAGATCATCGTCATCAAATCATCATCATCCTCGTCCTCGTCCTCGTCCCCGTCGTCTTCAAGAGTCTTCTTCTTGTATGTTTGATTTCTCTCACACAGATAATAATTCTTGTAGGCCTTTTATGTTGGAGACTTCGACCCAGAAAACGAATCATAATTCTCACCAAAAAGCTTTGGATCTTCAACTAGGCTTAGCCTTGGAGTCGAATGCAAGAATCTAA 795 0.3874 MEKQSFLCDVSSTWEVSENEQSMEKRLKLFGFELNSCSNNKTSSNEGDESVNSSNSVLSSSSGSGAGQEKIIVVTESSSTENPNSSSEEQRKFQCQYCFKEFANSQALGGHQNAHKKERMKKKRLQLQARKASLNFYLQQRCFQTSNNNNNNYYYYQYNNNNSSSSSWFYDPSSYNNSAELFNIHEGSQISFRSSSSNHHHPRPRPRPRRLQESSSCMFDFSHTDNNSCRPFMLETSTQKTNHNSHQKALDLQLGLALESNARI 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1162 264 ProSitePatterns Zinc finger C2H2 type domain signature. 95 115 IPR013087 -
Lele50g1162 264 MobiDBLite consensus disorder prediction 39 67 - -
Lele50g1162 264 Gene3D Classic Zinc Finger 72 152 - -
Lele50g1162 264 ProSiteProfiles Zinc finger C2H2 type domain profile. 93 120 IPR013087 -
Lele50g1162 264 SUPERFAMILY beta-beta-alpha zinc fingers 90 120 IPR036236 -
Lele50g1162 264 PANTHER ZINC FINGER PROTEIN 5 15 259 IPR044299 GO:0010090
Lele50g1162 264 MobiDBLite consensus disorder prediction 191 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1162 Lele-ChrLele50 7890652 7891446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1162 15 136 C2H2 Transcription Factor Family AT1G68360 40.650 2.11e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele50g1162 None None None