Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1155 ATGCTTGGCCACCCCACACATTTTGGTCAAATGGAATGCCTCAAGTTGATTGCTTCTCCTGGATTTCCAGAGAAGAGAATTGGTTATCTTGGCCCTATGCTGCTTCTTGATGAAAGACAAGATATTCTGATGTTGGTCACAAACTCCTTGAAACAGTATCCGGTTTCAATTTTGAAATCTATTTGACTTGCGCTTTGTGCTTTAGGAAACATTTGTTCAGCAGAAATTGCTCGTGATCTTGCACCAGAGGTTGAGAGGTTGCCGCAAGTTCGAGATCCAAATGTCCGGAAAAAGGCAGCATTATGCTCGATAAGAATCATAAAGAAGGTTCCAGACTTGGCAGAAAATTTTATTAATTCTGCTGCTGCGTTACTTAGGGAGAAGCATCATGGAGTTTTGATCACTGGGGTTCAGCTCTGTACAGAACTGTGTAAAGTTAGCGCAGAAGCCCTTGAATACTTTAGAATGAAATGCACTGTGGGTGTGGTCAGAAGTCTCAAGGACCTGGTCAACAGTCCTTATGCACCAGAGCAGCTGTGTGTTCATGGTCATGTTATGGTGGCTACCAAGACTGAGTCAAATGAAGTTGCAGGAAATGCCATTTTATATGAATGTGTTCAAGCAATCATGAGTGTTGAAGATAGTGGTGGCCTACGTGTGCTTGCCATCAATATCCTTGGAAGATTCTTGTCAAGTCGCGACAACAATATTAGGTTTGTCTTTGGACATTGCTATTTTTCCTTTTCTCTAATTTTCCATATCTTTAAAACGCAGCAAACACCAATTCAGCTAGTTATAATGTATGTTAAAGCCAGGTATGTGGCATTAAACATGCTGATGAAAGCTGTAATAGCTGATGCTCAGGCAGTGCAGAGGCATCGTGTAACTATTCTGGAATGTGTAAAGGATTCAGATACTTCAATTCAGAAAAGAGCTCTTGAACTTGTTTACGTTTTGGTGAATGAAAGTAATGTGAAGCCCTTAACAAAAGAGCTAATTGATTTTCTGGAAGTCAGTGATCAAGAATTCAGACCTGACCTTACTGCCAAAATTTGCTCTATAGTTGCCAAGTTTTCTCCAGAGAAGATTTGGTACATTGATCAGATGCTCATGGTTCTTGCTGAGGCTGGAAACTTTGTAAAAGATGAAGTATGGCATGCACTAATTGTTGTGATAAGCAATGCTTATGACCTCCATGGATACACAGTGAGAGCATTATGCAGAGCATTGCCAACTTCCGCTGAACAGGAAAGTCTTGTTCGAGTTGCAGTGTGGTGCATTGGAGAATATGGAGATATTTTAGTTAAGAATGTTGGAATGCTTGACATAGAGGATCCTATAGTGGTGACTGAATCAGATGCTGTGGATATTCTAGAGATGGCTATAAAACAACATGCACCGGATCTTACCACAAAAGCTATGGCTTTGATGGCCCTGTTGAAACTTAGTTCACGTTTTGGACCTTGTTCAGATTCTGCACTTGTAGAAAGGATGCCAGTTTTAGATGAGGCAACTTTTGTTGGTAGGAAAGCTGGTTATATGCCAGGCACAGCTTCAACTTCAACAGGACCTTCAGTTAATATTGCAATTGGGGTTGCCAAACCTTCTGTGGCTCCTCTTGTAGATCTGCTTCATTTAAGCTCAGATGATGTTCCTGCACCTAGCTCCTCTGGTGGTGATCTTCTTCAAAACCTTGTTGGTGTAGATTTGCCACTAGCATCACAACAATTTTCCCTCCATATTAGTATTGATTATCTTATAGCTTATATGACAAGTTCTGGTCAAGCTCCAAAAAGTGGTTCCGACGTTCTTTTGGATCTTTTGTCTGTTGGATCACCTTCTGTGCCTACTATGTCACCTGCACAAAGCCTTTCATCTGCAACAGACATCTTATCCTCTAGTATGAATAACAAAGCATTAGTTTCACCACTGGATGATCTCACTTCTCTCTCACTTTCTGAAAGAGCAACTTAAAACAATGGACCAGTTTATCCATCTATAACTGCATTTGAGAGCAGCTCCTTGAGGGTGACATTCAATTTCTCCAAAGAACCAGGAAAACCCCAAACAACAATTATTCAAGCTACCCTTACCAATTTGACTTCTAATACATATACAGATTTTATTTTCCAGGCGGCAGTTCCTAAGTTTCTTCAATTGCACTTAGATCCGGCTAGTGGCAATGCTCTGCCTGCTAGCGGTGATGGGTCCATCACACAGAATTTGAGAGTTACTAACACCCAGCATGGAAAGTCTTGCCTTTTCATTTATTCAAATGAGGGCCGTATGGTTGACTGGTTGAAGCCTCTGAGACCACATTTTGGCTCAAATTTGAAGTCTGCTTGGTGA 2349 0.4112 MLGHPTHFGQMECLKLIASPGFPEKRIGYLGPMLLLDERQDILMLVTNSLKQYPVSILKSIXLALCALGNICSAEIARDLAPEVERLPQVRDPNVRKKAALCSIRIIKKVPDLAENFINSAAALLREKHHGVLITGVQLCTELCKVSAEALEYFRMKCTVGVVRSLKDLVNSPYAPEQLCVHGHVMVATKTESNEVAGNAILYECVQAIMSVEDSGGLRVLAINILGRFLSSRDNNIRFVFGHCYFSFSLIFHIFKTQQTPIQLVIMYVKARYVALNMLMKAVIADAQAVQRHRVTILECVKDSDTSIQKRALELVYVLVNESNVKPLTKELIDFLEVSDQEFRPDLTAKICSIVAKFSPEKIWYIDQMLMVLAEAGNFVKDEVWHALIVVISNAYDLHGYTVRALCRALPTSAEQESLVRVAVWCIGEYGDILVKNVGMLDIEDPIVVTESDAVDILEMAIKQHAPDLTTKAMALMALLKLSSRFGPCSDSALVERMPVLDEATFVGRKAGYMPGTASTSTGPSVNIAIGVAKPSVAPLVDLLHLSSDDVPAPSSSGGDLLQNLVGVDLPLASQQFSLHISIDYLIAYMTSSGQAPKSGSDVLLDLLSVGSPSVPTMSPAQSLSSATDILSSSMNNKALVSPLDDLTSLSLSERATXNNGPVYPSITAFESSSLRVTFNFSKEPGKPQTTIIQATLTNLTSNTYTDFIFQAAVPKFLQLHLDPASGNALPASGDGSITQNLRVTNTQHGKSCLFIYSNEGRMVDWLKPLRPHFGSNLKSAW 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1155 782 Pfam Adaptin C-terminal domain 665 750 IPR008152 GO:0006886|GO:0016192
Lele50g1155 782 Gene3D - 1 502 IPR011989 -
Lele50g1155 782 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 662 779 IPR008153 -
Lele50g1155 782 PIRSF AP1_gamma 1 183 IPR017107 GO:0005794|GO:0016192|GO:0030121
Lele50g1155 782 PIRSF AP1_gamma 270 494 IPR017107 GO:0005794|GO:0016192|GO:0030121
Lele50g1155 782 PIRSF AP1_gamma 185 242 IPR017107 GO:0005794|GO:0016192|GO:0030121
Lele50g1155 782 PIRSF AP1_gamma 488 761 IPR017107 GO:0005794|GO:0016192|GO:0030121
Lele50g1155 782 Gene3D - 642 762 - -
Lele50g1155 782 Pfam Adaptin N terminal region 271 487 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lele50g1155 782 Pfam Adaptin N terminal region 1 240 IPR002553 GO:0006886|GO:0016192|GO:0030117
Lele50g1155 782 SUPERFAMILY ARM repeat 1 492 IPR016024 -
Lele50g1155 782 PANTHER ADAPTIN, ALPHA/GAMMA/EPSILON 492 754 - -
Lele50g1155 782 SMART alpha_adaptinc2 659 770 IPR008152 GO:0006886|GO:0016192
Lele50g1155 782 SUPERFAMILY Clathrin adaptor appendage domain 663 750 IPR013041 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1155 Lele-ChrLele50 7756382 7775005 Dispersed/Transposed
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1155 50 7756382 7775005 Lele53g0943 53 19049987 19051536 CCT
Lele50g1155 50 7756382 7775005 Lele54g0924 54 15701206 15702746 CCT
Lele50g1155 50 7756382 7775005 Lele55g0530 55 3421353 3424640 CCT
Lele50g1155 50 7756382 7775005 Lele56g0517 56 3782881 3784437 CCT
Lele53g0947 53 19081400 19084984 Lele50g1155 50 7756382 7775005 CCT
Lele54g0927 54 15726146 15728792 Lele50g1155 50 7756382 7775005 CCT
Lele55g0526 55 3388473 3391606 Lele50g1155 50 7756382 7775005 CCT
Lele56g0514 56 3756412 3758970 Lele50g1155 50 7756382 7775005 CCT
Lele50g1155 50 7756382 7775005 Lele50g1155 50 7756382 7775005 ECH
Lele50g1155 50 7756382 7775005 Lele51g1081 51 6986263 6998566 hybridization