Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1151 ATGGCTCCCGCTGCTACTCAACTCCCCTGCGATTGTGACGGTGCTTGTATGATCTGCAAGACGAAGCCTGCAGAGGAAGAAAAACTGGCGTGCAAAACCTGTGCTTCCCAATGGCATGTCAACTGTCTCTCTCACCACCGTCCGGAGACGATGGCGGAGACGCTTCAGTGGGAATGCCCCGATTGTTCGACGCCACCCTCCGATTTCCCTTCGGCGACCGTTGGCAAAGCCGTCCTTGATGGGTCCGGTGACTTGATGGCGAAGATCCGAGCCATTGAGGCCGATGGTTCTCTGACCGAACTTGAGAAAGCGAAGAAACGGCAACAAGTAATGAGTGGGAAGGCTGTGTCGGAGGAAGACGAATGTGGTGGGAAGAAGGTAGAAGGTGACGGGAAGGGCGTGTTAGATATTCTTAGCGGGAGTCTGAACTGTTCCTTCTGTATGCAGTTGCCCGAGAGGCCAGTCACGACGCCATGTGGCCACAATTTCTGCCTCAAGTGTTTTCAGAAATGGATTGCACAAGGGAAACTAATATGTGCCAAGTGTCGTAGAGACATCCCTTCCAAAATGGCAAGTCAACCACGCATAAATTCTGCACTTGTTATTGCTATCCGTATGGCCAAAGTATCAAAAAACTTAGGTGCAGGACAAACCTCTAGAGTTTATCAGTTCGTGCATAACCAAGACAAACCCGACAAGGCTTATACTACTGAGCGGGCCCAGAGGAAAGGGAAATCAAATGCATGCAGTGGAAAGATCTTTGTTACTGTCCCTCAGGACCATTTTGGTCCGATACCTGCAGAGAACGATCCAGTGAGGAATCAAGGTGTGCTGGTTGGTGAATGTTGGGAAGATAGACTTGACTGCCGGCAATGGGGTGCTCACTTTCCTCATGTTAGTGGTATTGCTGGACAATCAAACCATGGTGCCCAATCAGTAGTTCTTTCTGGTGGTTATATCGATGATGAGGATCATGGAGAGTATTTTCTTTATACTGGAAGTGGTGGTAGAGACTTAAGTGGAAACAAGCGAACAAGCAAACTACAATCATTTGATCAGAAGTTTGAAAAGTCCAATTTAGCTTTAAAAGTTAGCTGTTTAAAAGGTTATCCCGTTCGAGTTGTAAGATCTCATAAAGAGAAACGATCTTCATATGCCCCTGAGCAAGGATTACGTTATGATGGTGTTTATAGAATAGAAAAGTGTTGGCGGAAACAGGGATTGCAGGGCTTCAAAGTTTGTCGATACTTATTTGTCAGATGTGACAATGAACCTGCGCCATGGACAAGCGATGATCATGGAGATCGTCCCCGACCATTACCAGAAATTCCTGAGTTGGAAAAGGCTACAGACTTGGTTGTAAGGAAGGAGGATCCATCATGGGCTTTTGATGAGGAAGGATCTTGTTGGAAGTGGAAAAAACCACCGCCTCTCAGTCGAAAGCATGTGAAAGGTATGGACCCCCAAGAGGTAAAAAGGTCAAGGAGGGAAATAAGGAAAGCCCAAAATCTTTCAATCAGGGAAAGATTGCTGAAAGGATTCGGTTGCCTTATCTGTAAAGAGGTTATGGTTACTCCTGTGACGACACCCTGTGCTCATAATTTCTGTAAGTCGTGTTTGGAAGGCGCATTTGCTGGCAAGTCTTTTTTGAGGGAAAGAAGCAGGGGTGGAAGATCTCTGCGGTCCCAAAAGAATGTGATGAAATGCCCGTCTTGTCCTACTGACATCTCTGATTTTCTCCAGAACATTCAGGTCAATACAGAGTTGTTGGGCTTAATTGAATCATTAAAAGCTGAGGCTGAAGAAGAAAATAGAGATGAAAGTGAGAATGAAGATGGAGCAGAGGAGGAAGACGGTGATGATGCTGAGGCTACAATGGAGGATGAAGATATTGAGGCTATAATGGATGATGAAGATAAGGATACTTCGGTCGAGAAGCTTAATGATTCAGCTGAGGAAGCTGATGTTAGCAAACCACAATCAAAAGAACTTGCAGTGACCAATCGTGGAGCCAAGGATGATTGCAAAAGAAAGAGAGCTGATGCTGTAAAAGTTTCTCCCAAAGCCAAAGGTGGTAAACGTAAAAGTAAAAAGAAGGTTAAGGATGATGATGATGGAAATGATTCCCCAGCAAGTCCTCTTCATTTGCCATCAGACAATTAA 2163 0.4554 MAPAATQLPCDCDGACMICKTKPAEEEKLACKTCASQWHVNCLSHHRPETMAETLQWECPDCSTPPSDFPSATVGKAVLDGSGDLMAKIRAIEADGSLTELEKAKKRQQVMSGKAVSEEDECGGKKVEGDGKGVLDILSGSLNCSFCMQLPERPVTTPCGHNFCLKCFQKWIAQGKLICAKCRRDIPSKMASQPRINSALVIAIRMAKVSKNLGAGQTSRVYQFVHNQDKPDKAYTTERAQRKGKSNACSGKIFVTVPQDHFGPIPAENDPVRNQGVLVGECWEDRLDCRQWGAHFPHVSGIAGQSNHGAQSVVLSGGYIDDEDHGEYFLYTGSGGRDLSGNKRTSKLQSFDQKFEKSNLALKVSCLKGYPVRVVRSHKEKRSSYAPEQGLRYDGVYRIEKCWRKQGLQGFKVCRYLFVRCDNEPAPWTSDDHGDRPRPLPEIPELEKATDLVVRKEDPSWAFDEEGSCWKWKKPPPLSRKHVKGMDPQEVKRSRREIRKAQNLSIRERLLKGFGCLICKEVMVTPVTTPCAHNFCKSCLEGAFAGKSFLRERSRGGRSLRSQKNVMKCPSCPTDISDFLQNIQVNTELLGLIESLKAEAEEENRDESENEDGAEEEDGDDAEATMEDEDIEAIMDDEDKDTSVEKLNDSAEEADVSKPQSKELAVTNRGAKDDCKRKRADAVKVSPKAKGGKRKSKKKVKDDDDGNDSPASPLHLPSDN 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1151 720 SUPERFAMILY RING/U-box 510 598 - -
Lele50g1151 720 SMART G9a_1 267 424 IPR003105 -
Lele50g1151 720 SUPERFAMILY FYVE/PHD zinc finger 8 66 IPR011011 -
Lele50g1151 720 ProSitePatterns Zinc finger PHD-type signature. 10 62 IPR019786 -
Lele50g1151 720 ProSitePatterns Zinc finger RING-type signature. 531 540 IPR017907 -
Lele50g1151 720 Gene3D - 243 439 IPR036987 -
Lele50g1151 720 Pfam Zinc finger, C3HC4 type (RING finger) 142 187 - -
Lele50g1151 720 SUPERFAMILY PUA domain-like 246 443 IPR015947 -
Lele50g1151 720 FunFam Predicted protein 101 209 - -
Lele50g1151 720 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 243 438 - -
Lele50g1151 720 MobiDBLite consensus disorder prediction 599 720 - -
Lele50g1151 720 Pfam SAD/SRA domain 274 423 IPR003105 -
Lele50g1151 720 ProSiteProfiles YDG domain profile. 272 420 IPR003105 -
Lele50g1151 720 ProSiteProfiles Zinc finger PHD-type profile. 13 65 IPR019787 -
Lele50g1151 720 ProSiteProfiles Zinc finger RING-type profile. 516 572 IPR001841 -
Lele50g1151 720 Coils Coil 586 618 - -
Lele50g1151 720 CDD RING-HC 144 182 - -
Lele50g1151 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 209 IPR013083 -
Lele50g1151 720 MobiDBLite consensus disorder prediction 667 688 - -
Lele50g1151 720 MobiDBLite consensus disorder prediction 604 638 - -
Lele50g1151 720 SUPERFAMILY RING/U-box 136 190 - -
Lele50g1151 720 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 6 620 IPR045134 -
Lele50g1151 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 500 624 IPR013083 -
Lele50g1151 720 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 64 IPR013083 -
Lele50g1151 720 MobiDBLite consensus disorder prediction 639 659 - -
Lele50g1151 720 Pfam RING-type zinc-finger 516 570 IPR027370 -
Lele50g1151 720 SMART ring_2 16 62 IPR001841 -
Lele50g1151 720 SMART ring_2 516 572 IPR001841 -
Lele50g1151 720 SMART ring_2 144 182 IPR001841 -
Lele50g1151 720 ProSiteProfiles Zinc finger RING-type profile. 144 183 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1151 Lele-ChrLele50 7707890 7712221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1151 6 602 C2H2 Transcription Factor Family AT5G39550 62.023 0.0 746