Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1137 ATGGCGGATTCCGCCGCTTCTCCTGCCATTTCAGAGGCCAACCCGCAGAAAACTGATTCGGGTGCTCCCAATTCTCATCAGAACCAACCCGATCCGGTTCATCCCTCGGCAATACAACCTCCGCCATCATCCTCTGCGCCCGTCGGGGCAGTAAACCCTAATTCGAACCCATCAGGACTACCCACGCCACCTCCGCCACCTCCTTCCATTTCATATGCGGCGGCGGGGGCGGCCCCTCAAATCTCATGCGGAGCCGTTGGCCCTCCGGTCGTGCCATCCTTCAGGCCAGTAGCTCCGCAGACTGCCCAGTTTTCTCCCATATCTAACCCCATCAACTATCAAAATCCAGCTGTTCAGCCTCCCGGTGTAGGCTCTGCCTCCCCAATGACTCCTGGTGTGGCTAGTGGTGCCGGAGCGGTTCCAGTGCCAGGACAGATGCAGCCAATAATGATTCCTTATCAGTTTCCCGCCGGTCAGCATGCTAATCCGGCCATGAGACCCTTTGCACCGATGCCCAATGGTTATACCGCCATTCCAGGAGCTCCGCAAGGAACCATGCCTCCACCGGGTGGGTTACGTGTCATATCAGAAGGTTTGCCTCGGTATCCACCTCCTTATGGAACTATGGTTCGTCCTACATTTCCTCCACGCCCATCTGGAGCTGTTAATGTGCTTCCAGTATCACGCCCTCCTGTTGCTGGGATTCCTCCTGTTCGCCCTGTCATGCCCCCTGTGGTTAGACCGGTGGTTGCTCCTAGTATTACACCAGCTGATAAACCACAAACTACAGTTTATATTGGAAAGATTGCATCAACAGTGGAAAATGAATTTATGCTCTCTCTACTTCAGGTAAATTTCAACATTTTTTTATTATGTTCATTCTTGCAGTTGTGTGGGCCTATCAAGAGTTGGAAACGTCCTCAAAATCCAACGAATGGAACTCCTTTAAGCTTTGGATTTTGGGAGTTTGAGTCTGCTGAAGGTGTCCTCCGTGCATTGCGTCTGCTTAATAAATTGAATATTGATGGGCAAGAATTAACGGTCAATCCTAATGACGCTACAAAAGAATATCTGGAGAAGTATGTTAAGAAGAAAAATGAGAACTTGCAAAAGGATATTCAGGCTGTCGGATCTGAGAAAGATGATGAGAGTGCCCAACCTTCGAATGCAAAAGAGGATGGAAAGCCTGATGACTCAAAGAAAGAGGACAGTAAGTCAGTGAACAAGGAAAATCATAATGTGACAAATCTCAGTATCATTACTGATGAAGACAGGGAAGCTGATAGAGAGGCCTTAGAGAAGATTACAAACATGATAGAGGAGAGACTGAAGAGAAGACCTTTACCTCCACCTCCTGCACAGACAGCTCCAGATGGCCCTGCAAATTCAGCTTTGGAACAACCTTCAAAAGCAAGAGATGGAGACTCTGATGCAGATACAGTGAATAATGAAGCAGGGGATGATAAAAATGAAAAGGAGACAAATAGTGAGAACAAAGCAACCAGTGAACATGATAGGCCTGAGACCCCTGATAATAGAAGGCATGATAGGAGGAGCAGAGAAAGAGACCGAGATAGAGAACTAAAACGAGAAAAGGATAGGGAACTTGAAAGATATGAAAGAGAAGCAGAGCGAGAGCGCATTAGGAAAGAGAGGGAACAGAGGAGGAGGATTGAGGAGGCTGCGCGCCAGTATGAAGCATGTTTGAAGGATTGGGAGTATAGAGAAAGAGAGAAAGAGAAAGAACGTCAATATGAGAAGGAGAAGGAGAAAGAACGGGAGCGCAAGCGTAGAAAGGAGACACTCTATGATGAAGAGGATGAGGATGAGGATTCAAGGAAGAGGTGGCGCAGAAGTTTGTTAGATGAGAAACGAAAGAAAAGATTGCGGGAAAAGGAAGAGGACCTGGTCGACAGACAAAAGGAAGAGGAAGAAATTGCTGAGGCCAAAAGGAGGGCTGAGGAGGATCAACAACTGAAGCAGCAGAGGGATGCACTGAGGCTATTTTCTGAGCAGGTGAATGGTGGTGAAAAAAGTATGGCTACTGAGGATATGACTACTCAAGCCAAAAGTATTGTTACTGAACAAGTCACTGTAGCTGACCATGGTTATGAAGGCCATATAGGTGATGGTAATCCACTAAATTGCACCAACGATGAATCAACCATAACATCAGTTGCCGTTTCTGATACACGACAGAGTGGCTACGCCCCTGCTAAGAAGTTGGGTTTTGGTTTGTTTGGTTCTGGGAAAAGAACCACTGTTCCTTCTGTCTTCCATGAGGAGGAGGAAGATGATGCACAAAAGGATAAAAAGATGAGGCCTCTGGTTCCAATTGATTACTCAACTGAAGAACTGCAGGCTGTTCAACCAACTGTTTCTGGGGCCCCGTCCCCAAATTTGGCTGCAGCCGCAGAATTTGCTAAGCGATTATCCAATGCCAATATCAAGGAAGAGAAGGTAGATGGAGAGTGGGATAGAAGTAGGCGTTCTAGTGAGAAGTCCAACTACCGAGGTAGGGACAGGAATGACTACAATGGCTCTCACAACAAAGATGAAAGCAGGGAAAAGATTTCTGAACGTGACAGGGATCGAGATCGTGGGTTGGAAAAACAGAAGACATCAGATAACAAAAAGTTATTAGATGCGAAACAGTTGATTGATATGATACCAAAGACCAAAGATGAGCTCTTCTCATATGAGATAAACTGGGCAGTGTATGATAAGCACCAGCTGCATGAAAGAATGAGACCATGGATATCGAAGAAGATCACAGAGTTCTTAGGGGAAGAAGAAACGACATTGGTAGATTACATAGTTTCAAGCACGCAGGAACATGCGAAAGCATCCCGGATGCTGGAGCTGCTTCAATCCATTTTAGATGAAGAAGCCGAAATGTTCGTTCTCAAGATGTGGAGGATGCTTATTTTTGAAATAAAGAGGGTAGAGACAGGCCTTTCTACGAGGTCAAAATCTTGA 2979 0.4642 MADSAASPAISEANPQKTDSGAPNSHQNQPDPVHPSAIQPPPSSSAPVGAVNPNSNPSGLPTPPPPPPSISYAAAGAAPQISCGAVGPPVVPSFRPVAPQTAQFSPISNPINYQNPAVQPPGVGSASPMTPGVASGAGAVPVPGQMQPIMIPYQFPAGQHANPAMRPFAPMPNGYTAIPGAPQGTMPPPGGLRVISEGLPRYPPPYGTMVRPTFPPRPSGAVNVLPVSRPPVAGIPPVRPVMPPVVRPVVAPSITPADKPQTTVYIGKIASTVENEFMLSLLQVNFNIFLLCSFLQLCGPIKSWKRPQNPTNGTPLSFGFWEFESAEGVLRALRLLNKLNIDGQELTVNPNDATKEYLEKYVKKKNENLQKDIQAVGSEKDDESAQPSNAKEDGKPDDSKKEDSKSVNKENHNVTNLSIITDEDREADREALEKITNMIEERLKRRPLPPPPAQTAPDGPANSALEQPSKARDGDSDADTVNNEAGDDKNEKETNSENKATSEHDRPETPDNRRHDRRSRERDRDRELKREKDRELERYEREAERERIRKEREQRRRIEEAARQYEACLKDWEYREREKEKERQYEKEKEKERERKRRKETLYDEEDEDEDSRKRWRRSLLDEKRKKRLREKEEDLVDRQKEEEEIAEAKRRAEEDQQLKQQRDALRLFSEQVNGGEKSMATEDMTTQAKSIVTEQVTVADHGYEGHIGDGNPLNCTNDESTITSVAVSDTRQSGYAPAKKLGFGLFGSGKRTTVPSVFHEEEEDDAQKDKKMRPLVPIDYSTEELQAVQPTVSGAPSPNLAAAAEFAKRLSNANIKEEKVDGEWDRSRRSSEKSNYRGRDRNDYNGSHNKDESREKISERDRDRDRGLEKQKTSDNKKLLDAKQLIDMIPKTKDELFSYEINWAVYDKHQLHERMRPWISKKITEFLGEEETTLVDYIVSSTQEHAKASRMLELLQSILDEEAEMFVLKMWRMLIFEIKRVETGLSTRSKS 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1137 992 PANTHER SPLICING FACTOR PWI DOMAIN-CONTAINING PROTEIN / RNA RECOGNITION MOTIF (RRM)-CONTAINING PROTEIN 3 992 - -
Lele50g1137 992 SMART rrm1_1 263 349 IPR000504 GO:0003723
Lele50g1137 992 SUPERFAMILY RNA-binding domain, RBD 235 353 IPR035979 GO:0003676
Lele50g1137 992 SUPERFAMILY PWI domain 913 978 IPR036483 GO:0006397
Lele50g1137 992 MobiDBLite consensus disorder prediction 9 33 - -
Lele50g1137 992 Coils Coil 366 386 - -
Lele50g1137 992 MobiDBLite consensus disorder prediction 630 659 - -
Lele50g1137 992 MobiDBLite consensus disorder prediction 376 560 - -
Lele50g1137 992 SMART pwi_2 908 981 IPR002483 GO:0006397
Lele50g1137 992 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 353 IPR000504 GO:0003723
Lele50g1137 992 ProSiteProfiles PWI domain profile. 895 992 IPR002483 GO:0006397
Lele50g1137 992 Coils Coil 574 609 - -
Lele50g1137 992 MobiDBLite consensus disorder prediction 1 73 - -
Lele50g1137 992 MobiDBLite consensus disorder prediction 819 875 - -
Lele50g1137 992 CDD RRM_RBM25 262 358 IPR034268 -
Lele50g1137 992 Gene3D - 255 382 IPR012677 -
Lele50g1137 992 Coils Coil 623 659 - -
Lele50g1137 992 Coils Coil 522 568 - -
Lele50g1137 992 Pfam PWI domain 915 978 IPR002483 GO:0006397
Lele50g1137 992 Gene3D PWI domain 871 988 - -
Lele50g1137 992 MobiDBLite consensus disorder prediction 470 560 - -
Lele50g1137 992 MobiDBLite consensus disorder prediction 419 447 - -
Lele50g1137 992 FunFam RNA Binding Motif protein homolog 871 987 - -
Lele50g1137 992 MobiDBLite consensus disorder prediction 576 614 - -
Lele50g1137 992 MobiDBLite consensus disorder prediction 57 72 - -
Lele50g1137 992 MobiDBLite consensus disorder prediction 376 409 - -
Lele50g1137 992 MobiDBLite consensus disorder prediction 750 783 - -
Lele50g1137 992 MobiDBLite consensus disorder prediction 756 778 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1137 Lele-ChrLele50 7555646 7563439 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1137 50 7555646 7563439 Lele50g1137 50 7555646 7563439 ECH
Lele50g1137 50 7555646 7563439 Lele51g1064 51 6856040 6863543 hybridization
Lele50g1137 50 7555646 7563439 Lele52g1104 52 7496288 7503979 hybridization