Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1128 ATGTCTTTCCAAGTTCAGCCACAAGCACAGCCACAACAGCCAGTTCAGGTGTACCCTATCAGTGTCTCCTACCAGCCACCTAATTCCCATCATTCCAATGGATCCTTTGGCACTGTTTTCATAGTGCTTGCTGTCATTTTAGGCATTTCTCTTCTTGCTTGCTTTCTCAGTCGCCTCTGCAGCCGACGCAGCAGCCCGGAGAGCCACCATGGTGGTGGTCATGGCCCTAAACCATTCAAGCAGCAGCAAAACATGAATCAGAACCAGAACCACCACTTCCGACCCAAAGAAGGTGATGTTGAGCTTGGGTTTGACAAGAGAATTCCTCCTGCCACACCCACTGGGCCTGGGTATGGAGGCCGAGGACCAAGGCCACTAAACGGTGTTGGTGGAGGCAATGGTGGTATTAGCAGTGGTGGTGAAGAGAAGGGCTTTGAGATGAAAAATGTCGGAGAAGGAAGCATGAGAGAGCAAGGGCACGGGAACGGACCTGGGTATGGAGGCCGAGGTCCGAGGCCACTTGTCTACGGTGGCGGCGGAAGCAACAGAGGTGTTAATGGTGGTGAAGAGAAGGGGTTCGAGATGAAGAATGAGGGAGAAAGAAGTCGAAGAGAGCAGGGATACAGGCATGAGCATGATGCTCCTTATAAGTTTACCTTAACAAAACCTCAAAAAGCTAACTTCAAAGAAAGCAAATTTGCAGTATTAGGAGGAGACACAAAAATGCCAGCCTTTGAGGTTGCAGAAGCAGTGGAGGGATTCAGAACCTTGACTGAGACTAAAGCTTGGGACTATGTTGTAGTATGGAAGTATGGCGATGATCCCACAAGATTTATCGAGTGGATGGGTTGTTGTTGTGTTGGGGGATGTAATGGAAGCAAGAAGGAAGAGGAAGAGGGGGAAGAATACAGATTGAGTCCTAAATGTAGGGATAGTCACTTTCAGCATCCAGTGAGAACCAAGGCTTGTGAGGCTCTTGCTCTGCTTCCTTATACCATGCCACTTTATTCTGGTGTTCATGGAGATGTGGCAATATCAAAACAATCTCAATGGCTTACCCAGGATTCAACAGGAACCCAAGTTTTGATCCCTATCATTGGTGGTATTATAGAGCTCTTCTCTGCAGAGATTGTACCAAAAGATTCAAGGATCTTAGAATTCATAACTGCACGTTGTTGTTGTCTCTCTATGAAAAATGAAGCCATCTCTGAACATCCACCATTAAATCCATGTTATCCAGAGAGTTTAATTTCTAGCATACATGAATCTGCATTAGAGCAGTGTAGCTCTCATCCAAGCATTGAAGGATCCTCCAGTGGCTCAAATCCTTCAAATGAAACTTCAAAAGAGCATCAAAGAGGTTTGGATTTCCAGTGTGGCACCCTGGAAGAAGAAGATAAACCAGAGTTGGTCAAGAGACCTCAAAGGGAAGGCTATACATCTAAAAATCTTGTCACAGAGAGGAATAGGAGGAACAAGATCAAAGATGGGCTTTACACGCTACGAGCTTTGGTCCCAAAGATAACCAAGATGGATAGGGCATCCATTGTTGGAGATGCCATTGATTATATAAAGGAACTGCAGGAACAAGAAAAAGGACTTAGAGATGAGATTAAAGCTTTGGAAGAAGAGGATTATGTAAAGAACAAACCACAGAGGATGAGGCCAATATTGAAGGAACCAGGAGGAACCAGAAGTTTGCATCTTGATTCCACAAGAAGTACCCAGATGGAGGCAGAAAAGAGAGTGCAGGTTGAAGTGAACCAGATTGGGAAGAGAGAGTTTCTTCTGAAGATACACTGTGAGCAGAAGAGAGGAGGGTTTGCAAGATTGATGGAGGCTATTCATTTGTTTGGACTGCAAGTAACTGATGCTAATGCGAACAAATTTGGTGGCAAAGTCATGAATATTCTGACTGTTAAGGCAAACAAGCTTGATATTCACCCAGATATATTGAGAGAGTATTTAACTAAGCAGCAAGCTGGTTCTCAAGAAAGAGGAGTTGACGTTGAGTTCAAGAAAGCTTAG 2028 0.4487 MSFQVQPQAQPQQPVQVYPISVSYQPPNSHHSNGSFGTVFIVLAVILGISLLACFLSRLCSRRSSPESHHGGGHGPKPFKQQQNMNQNQNHHFRPKEGDVELGFDKRIPPATPTGPGYGGRGPRPLNGVGGGNGGISSGGEEKGFEMKNVGEGSMREQGHGNGPGYGGRGPRPLVYGGGGSNRGVNGGEEKGFEMKNEGERSRREQGYRHEHDAPYKFTLTKPQKANFKESKFAVLGGDTKMPAFEVAEAVEGFRTLTETKAWDYVVVWKYGDDPTRFIEWMGCCCVGGCNGSKKEEEEGEEYRLSPKCRDSHFQHPVRTKACEALALLPYTMPLYSGVHGDVAISKQSQWLTQDSTGTQVLIPIIGGIIELFSAEIVPKDSRILEFITARCCCLSMKNEAISEHPPLNPCYPESLISSIHESALEQCSSHPSIEGSSSGSNPSNETSKEHQRGLDFQCGTLEEEDKPELVKRPQREGYTSKNLVTERNRRNKIKDGLYTLRALVPKITKMDRASIVGDAIDYIKELQEQEKGLRDEIKALEEEDYVKNKPQRMRPILKEPGGTRSLHLDSTRSTQMEAEKRVQVEVNQIGKREFLLKIHCEQKRGGFARLMEAIHLFGLQVTDANANKFGGKVMNILTVKANKLDIHPDILREYLTKQQAGSQERGVDVEFKKA 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1128 675 MobiDBLite consensus disorder prediction 428 448 - -
Lele50g1128 675 MobiDBLite consensus disorder prediction 189 208 - -
Lele50g1128 675 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 478 527 IPR011598 GO:0046983
Lele50g1128 675 Coils Coil 524 544 - -
Lele50g1128 675 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 255 389 IPR025610 -
Lele50g1128 675 SMART finulus 484 533 IPR011598 GO:0046983
Lele50g1128 675 Gene3D - 472 545 IPR036638 GO:0046983
Lele50g1128 675 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 479 544 IPR036638 GO:0046983
Lele50g1128 675 MobiDBLite consensus disorder prediction 428 481 - -
Lele50g1128 675 MobiDBLite consensus disorder prediction 63 208 - -
Lele50g1128 675 MobiDBLite consensus disorder prediction 449 476 - -
Lele50g1128 675 Pfam Helix-loop-helix DNA-binding domain 486 528 IPR011598 GO:0046983
Lele50g1128 675 MobiDBLite consensus disorder prediction 556 575 - -
Lele50g1128 675 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 384 651 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1128 Lele-ChrLele50 7430921 7437329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1128 333 663 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G10610 31.944 1.01e-44 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele50g1128 bHLH-MYC_N 2.6e-13 CL0161