Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1119 ATGTTGGGGGGCAACAATGGAAATCCTGTTCTTCCTGTTTTCCTGGAAGATGCTCACATGCAATATCAAACTAATGCAGCAAATCAACTGCAGTTGCTTGGAAACTTACCTGCTGGGTGTAGTGTTGATCCAGTTAATTACTTTGGAAATGACCATATTAGTTCTATGGTTCGGCCAAGCAGACAAACCAGGGAAATAGATGACATGTCCAAGCAGCAAAGGCTTCAGATTTCCTTAAATTACAACTTCTGTCAAGATGAAACTGATCGATCCGCAAGTATTCCAAACCCAAATCCAAATCCAAATCCAAATCCAAACCCTGTGTCAACCGGATTGAGGTTGTCTTATGATGACGACGAGCGTAACTCATCTGTCACTTCTGCAAGTGGAAGCATCACTGGCGCGCCTTCAATCATATTATCCCTTGGTGACAATATTAGAACTGAGCTTGATAGGCAGAAGCAAGAATTGGACCAGTATATTAAACTTCAGAAGGAACAGTTGTCAAAAGGATTGAGAGACATGAAACAAAAGCACATGGCATCTCTTCTTACTGCCATTGATAAAGGTGTAAGCAGGAAGCTAAGGGAAAAAGAAGTGGAGATAGAGAACATGAACCGTAAGAACCGAGAACTAGCGGAGAAAATAAAGCAGGTAGCCACGGAAGCACAAACTTGGCATTGCAGAGCAAAGTACAACGAGTCGGTTGTGAATGTTCTAAGGAACAATCTCCAGCAGGCTATATCGCAGGGTGTTGAACAAGCAAAAGAAGGGTTTGGGGACAGTGAGGTTGATGATGCTGCCTCCTGCATTGCCCCCAACAAGTTGCTGAGCATCCATGGCTTGCCGATGAAATCTACCTCCACCGGAAAGAAGCCGCAGCAATGCTTGGAGGAGCACATGATTTGCAGGTCGTGCAAGGCGAAGGAGGTTTCAATGTTGTTAATGCCTTGTAGGCACCTGTGCTTGTGTATGGACTGTGATGCTTATGTCAATGTTTGTCCTGTATGCCAAATGATGAAGTCTGCTAGTGTCCAAGTGTATTTTTCTTAA 1053 0.4397 MLGGNNGNPVLPVFLEDAHMQYQTNAANQLQLLGNLPAGCSVDPVNYFGNDHISSMVRPSRQTREIDDMSKQQRLQISLNYNFCQDETDRSASIPNPNPNPNPNPNPVSTGLRLSYDDDERNSSVTSASGSITGAPSIILSLGDNIRTELDRQKQELDQYIKLQKEQLSKGLRDMKQKHMASLLTAIDKGVSRKLREKEVEIENMNRKNRELAEKIKQVATEAQTWHCRAKYNESVVNVLRNNLQQAISQGVEQAKEGFGDSEVDDAASCIAPNKLLSIHGLPMKSTSTGKKPQQCLEEHMICRSCKAKEVSMLLMPCRHLCLCMDCDAYVNVCPVCQMMKSASVQVYFS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1119 350 MobiDBLite consensus disorder prediction 88 130 - -
Lele50g1119 350 Pfam Zinc finger, C3HC4 type (RING finger) 301 339 - -
Lele50g1119 350 PIRSF SBP1_RNase_bind 1 350 IPR017066 -
Lele50g1119 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 350 IPR013083 -
Lele50g1119 350 Coils Coil 195 222 - -
Lele50g1119 350 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 70 347 IPR017066 -
Lele50g1119 350 FunFam probable BOI-related E3 ubiquitin-protein ligase 2 284 349 - -
Lele50g1119 350 ProSiteProfiles Zinc finger RING-type profile. 303 338 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1119 Lele-ChrLele50 7348805 7350998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1119 299 348 C3H Transcription Factor Family AT1G73950 38.000 2.46e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1119 50 7348805 7350998 Lele50g1119 50 7348805 7350998 ECH
Lele50g1119 50 7348805 7350998 Lele51g1044 51 6687886 6689895 hybridization
Lele50g1119 50 7348805 7350998 Lele52g1082 52 7261480 7263685 hybridization