Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1108 ATGTACGGCTTATCGTCGTCTCCTGTGGATTACTCCGACAAAGCCATCATGTCGCCGGAGAATCTGATTTTCCCCGCCGATTACCAGAGCTTCCTCATGTCTTCCTCCGTCGTACCACCTGGCTTCCATGATCGGATTCCCGTTTTAGGATCCGACGAGTTGCTTTCCGCTGCCTCCGCGGTTACCGAAGTTGAAGCCTCCGTCGCTGCTGCTCCTGAATTTCGGCCACAAGAGGAGGATGACTCTTCCTCCATCATCAAAGCCAGAATAGCATCTCATCCTCAATATCCTCGTCTCATTCAAGCTTATATCGATTGCCAGAAGGTAGGGGCACCTCCAGAAATAGCGTGTTTGTTAGATGAAATCCAGCGAGAAAACGACCTTAGCCAGAGGGACCTTGTTTCCACGTGCTTTGGAGACGACCCCGAGCTCGACGAGTTCATGGAAACCTACTGCCACGTGCTGATGAAGTATAAATCTGATCTTGTTCGGCCTTTTGATGAAGCAACCTCCTTCCTCAACAAGATTGAAACTCAGCTCAGCACTCTCTGCAATGGTGCTTCCATTCTAAGCCTTTCCGATGATGGGGGTGTGTCTTCGGAAGAAGGAGATTTCAGTACTGAAGGTGGAGACGCTCAGGATGAAGATCGACAGCTTAAGGATAGTCTTTTACGCAAGTTTGGGAGTCGTATTGGCTCTTTGAAGTTGGAGTTCTCAAAAAAGAAGAAGAAGGGAAAGCTGCCAAAAGAAGCCAGGCAAACACTGCTTGAGTGGTGGAGTGTTCACTACAAGTGGCCATACCCAACGGAATCTGATAAGGTTGCTCTGGCCAAGTCGACGGGTCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAGAGAAAGCGGCACTGGAAGCCATCTGAAAGCTTCAGCGTGCAATTTTCTGACATGGATAATCTTAATGGACTGTTTTTAACTGATGAATGA 972 0.4784 MYGLSSSPVDYSDKAIMSPENLIFPADYQSFLMSSSVVPPGFHDRIPVLGSDELLSAASAVTEVEASVAAAPEFRPQEEDDSSSIIKARIASHPQYPRLIQAYIDCQKVGAPPEIACLLDEIQRENDLSQRDLVSTCFGDDPELDEFMETYCHVLMKYKSDLVRPFDEATSFLNKIETQLSTLCNGASILSLSDDGGVSSEEGDFSTEGGDAQDEDRQLKDSLLRKFGSRIGSLKLEFSKKKKKGKLPKEARQTLLEWWSVHYKWPYPTESDKVALAKSTGLDQKQINNWFINQRKRHWKPSESFSVQFSDMDNLNGLFLTDE 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1108 323 FunFam Homeobox protein knotted-1-like 2 243 305 - -
Lele50g1108 323 CDD homeodomain 250 302 IPR001356 GO:0003677
Lele50g1108 323 SUPERFAMILY Homeodomain-like 239 310 IPR009057 -
Lele50g1108 323 SMART KNOX1_2 84 128 IPR005540 GO:0003677|GO:0005634
Lele50g1108 323 Pfam KNOX1 domain 86 127 IPR005540 GO:0003677|GO:0005634
Lele50g1108 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 84 302 - -
Lele50g1108 323 MobiDBLite consensus disorder prediction 194 216 - -
Lele50g1108 323 Pfam KNOX2 domain 138 184 IPR005541 GO:0003677|GO:0005634
Lele50g1108 323 Pfam ELK domain 219 239 IPR005539 GO:0003677
Lele50g1108 323 Gene3D - 237 309 - -
Lele50g1108 323 SMART ELK_2 218 239 IPR005539 GO:0003677
Lele50g1108 323 SMART KNOX2_2 134 185 IPR005541 GO:0003677|GO:0005634
Lele50g1108 323 ProSitePatterns 'Homeobox' domain signature. 276 299 IPR017970 GO:0000981|GO:0006355
Lele50g1108 323 ProSiteProfiles 'Homeobox' domain profile. 238 301 IPR001356 GO:0003677
Lele50g1108 323 SMART HOX_1 240 305 IPR001356 GO:0003677
Lele50g1108 323 ProSiteProfiles ELK domain profile. 218 238 IPR005539 GO:0003677
Lele50g1108 323 Pfam Homeobox KN domain 258 297 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1108 Lele-ChrLele50 7214297 7223159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1108 1 323 Homeobox Transcription Factor Family AT1G23380 62.874 1.13e-134 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele50g1108 KNOX2 2.4e-24 No_clan