Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1081 ATGGCTCTGCTTCTTGGCGCTTATCAACCTCACTCGCTATCTTCATTATCAGTCCGTCAAGAACTCACTTCTAAGCCTTTGATCAGAGTTTCTCTGTATCGCTTCCATTTCCCTTCTAATTCTATAATTCCACCTCTTCGCTTCACTTCTGCTTTCAGTTCCTGGAAAGTTCTTCTAAGCCCTCCAAAGTCATCGTCCATAAATGGGGTTTCGCTTCAGAATCATTTAGGCGCTTCGAGGGAAGACCATGGAGAAGATGAAGACAATGTTGACTTTCTGGAGAGGCTTAGAAGATGGTTTGGTTTCCTTCTCTCGATTTTTCCGGGTGGAGATTGGTGGGACTTCTTCGATGAAGTCAATGTTCAAGGTCTGGCCAAGCCGGTGACTGTTTGGCGCGCGCTTGCCAAAATGTGGGAACTTGTTGCTCAAGATAGGTGGATTATTTTCGCTGCGTTCTCGACTCTGATTCTTGCAGCGGTTTCGGAGATTTCAATACCACATTTCTTAACTGCATCCATCTTCTCCGCTCAGGGTGCGGAAATTACAGTCTTCCGTCGGAATGTGCGTCTCTTGGTTCTACTGTGTTTAACTTCCGGAATATGCAGTGGAATACGAGGTTACTGTTTTGGCATTGCAAACATGATTTTGGTTAAGAGGATGAGAGAAACATTATACTATTCCCTTCTTCTTCAGGATATATCGTTTTATGACTGTGAAACAGTTGGCGATTTGACAAGCAGGCTTGGGGCAGATTGTCAACAAGTGTCACGTGTTATTGGAAATGATCTTAACTTGATATTGCGCAATGTTCTTCAGGGAGGAGGTGCATTAATCTACCTGTTGGTTTTGTCTTGGCCACTTGGATTATGTACACTGGGTATATGCACAATATTATCAGTAGTCATGCTAATTTATGGAAGGTATCAGAAAAAGGCTGCAAGGTTGATCCAAGAAGTTACTGCCTCTGCAAATCAAGTAGCTCAGGAAACATTCTCTCTCATTAGGACTGTCCGTGTTCATGGAACTGAAGGAAAAGAACTTGGAAGATATAAATGGTGGCTGATGAGGTTAGCTGATATAAGTTTGCGACAAAGTGCTGCTTATGGATTTTGGAATTTAAGTTTCAACACTCTTTATCATTCTACTCAGGTTATTGCCGTGCTGTTTGGAGGAATGTCCATTCTAGCAGGTCATATTACTGCAGAGAAACTCACCAAGTTCATACTATACAGTGAATGGCTCATTTATTCAACCTGGTGGGTTGGAGACAATATATCCTCTTTGATGCAATCAGTTGGAGCCAGTGAAAAAGTATTTCGATTGATGGATCTCTTACCAAGCAGCCAATTCATAGCAAGGGGGGTAAAGCCACAGAGATTAACGGGGCTTATTGAGTTTATGGATATTTCTTTTCACTACCCTTCAAGGGCAACGGTACCTGTTGTGCAACATGTAAGCTTTTCTGTTGATCCTGGTGAGGTGGTTGCAATTGTTGGTCTTAGTGGTAGTGGAAAAAGCACACTGGTAAACCTTTTGCTTCGGCTATATGAGCCAACAAATGGTCAGATTTTGATTGATGGCTACCCTCTTAAAGAGTTGGACATCATGTGGTGGAGAGAAAGAATTGGTTACGTGGGACAGGAGCCAAAGCTCTTTCGCATGGATATTATTTCGAACATCAGATATGGATGCACTCGTAGTACGAAGCAGGAGGATGTTGAATATGCTGCCAAGCAGGCCTATGCTCATGAATTCATCTCAGCACTTCCTAATGGTTATGAAACACTTGTTGATGATGATCTATTAAGCGGGGGACAAAGGCAGCGAATCGCCATCGCAAGGGCCATTCTTAGGGACCCAACTATTTTGGTCCTTGATGAAGCCACCAGCGCACTGGATGCTGAGAGCGAATATAATGTCCAGGGTGTATTTCGATCAGTCAGAAGTGACTCCACGATGAGAAGCGTCATAGTCATTGCACACAGGCTTTCTACCATAAAAGCGGCTGACAGGATCGTGGTAATGGATGGTGGTCGAGTAGTTGAGATTGGGAGTCACAGGGAACTTCTCTTGAAAGATGGTTTATATGCACGATTGACTAGAAAACAGGCCGACGCGATGGCATGA 2127 0.4358 MALLLGAYQPHSLSSLSVRQELTSKPLIRVSLYRFHFPSNSIIPPLRFTSAFSSWKVLLSPPKSSSINGVSLQNHLGASREDHGEDEDNVDFLERLRRWFGFLLSIFPGGDWWDFFDEVNVQGLAKPVTVWRALAKMWELVAQDRWIIFAAFSTLILAAVSEISIPHFLTASIFSAQGAEITVFRRNVRLLVLLCLTSGICSGIRGYCFGIANMILVKRMRETLYYSLLLQDISFYDCETVGDLTSRLGADCQQVSRVIGNDLNLILRNVLQGGGALIYLLVLSWPLGLCTLGICTILSVVMLIYGRYQKKAARLIQEVTASANQVAQETFSLIRTVRVHGTEGKELGRYKWWLMRLADISLRQSAAYGFWNLSFNTLYHSTQVIAVLFGGMSILAGHITAEKLTKFILYSEWLIYSTWWVGDNISSLMQSVGASEKVFRLMDLLPSSQFIARGVKPQRLTGLIEFMDISFHYPSRATVPVVQHVSFSVDPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQILIDGYPLKELDIMWWRERIGYVGQEPKLFRMDIISNIRYGCTRSTKQEDVEYAAKQAYAHEFISALPNGYETLVDDDLLSGGQRQRIAIARAILRDPTILVLDEATSALDAESEYNVQGVFRSVRSDSTMRSVIVIAHRLSTIKAADRIVVMDGGRVVEIGSHRELLLKDGLYARLTRKQADAMA 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1081 708 Gene3D ABC transporter type 1, transmembrane domain 297 461 IPR036640 GO:0005524|GO:0016020
Lele50g1081 708 Pfam ABC transporter 483 630 IPR003439 GO:0005524
Lele50g1081 708 Gene3D ABC transporter type 1, transmembrane domain 118 295 IPR036640 GO:0005524|GO:0016020
Lele50g1081 708 PANTHER ABC TRANSPORTER B FAMILY 142 700 - -
Lele50g1081 708 FunFam Multidrug ABC transporter ATP-binding protein 456 707 - -
Lele50g1081 708 SUPERFAMILY ABC transporter transmembrane region 136 446 IPR036640 GO:0005524|GO:0016020
Lele50g1081 708 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 457 703 IPR027417 -
Lele50g1081 708 CDD ABC_6TM_TAP 151 438 - -
Lele50g1081 708 Gene3D - 462 704 IPR027417 -
Lele50g1081 708 FunFam ABC transporter B family member 26, chloroplastic 130 449 - -
Lele50g1081 708 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 149 430 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele50g1081 708 SMART AAA_5 491 679 IPR003593 -
Lele50g1081 708 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 464 702 IPR003439 GO:0005524
Lele50g1081 708 Pfam ABC transporter transmembrane region 154 415 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Lele50g1081 708 ProSitePatterns ABC transporters family signature. 602 616 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1081 Lele-ChrLele50 6994548 7001093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1081 219 706 Calmodulin-binding Proteins AT2G36910 34.669 2.03e-71 251