Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1072 ATGGGCCGAACCAGGAACCGACCCATTACAAATGATAAATTAGGGTGCGGAGAAGATTGCCACAGTACCAGGGCAGCTAGTGTGGGAAATCGTGAAGAAGAAAAACGTTTTTTTGGTGGTGGAGTTTGTGATTCACTTGTTTATGCATTAAATTGGTTTTATACCGGTATTCTAGGTTTGGCAAACAAGAAAACTATTACTATTCAGCCTGCTAGCAAGGATCAATCTGTGCTGCTGGCAACGACCAAGACAAAGAAGCAGAACAAGCCAGCTTCATTGCTTCATAAGTCTGTCATGAAAAAGGAGTTCAGAATGATGGCAATGGCAGTAGGGAACCAGGGGATTTGTGTCTTATCGTTTTCCAGCAAAGCTTGGTTAAATGCATGTGAAAACTTGGACCCACAACGAATAACTCCTATAAATAAAACCATACGATGCCTTCTGCAACGTTCTGATTCTGACTTCACAGAAATGGCTACGACGACGAAGGAGGCTGCTTCTGCTTCTGCACCCTCAAGCGAATCAAAAGTTCCATTGCTAGAACATGTACAAGAAGATCTCGCACGAAGGGTTTGGGTTGAATCAAAGAAGCTCTGGCACATTGTAGGCCCTGCAATCTTCAGCCGTATTACTTCTTACGCCATATTAGTCATCACCCAAGCCTTCGCCGGCCATCTCGGCGACCTTGAACTCGCCGCCATCTCCATCGTAACAAATGTCATCCTCGGATTCGACATCGGCCTCTTGCTGGGTATGGCGAGCGCCTTAGAAACACTATGCGGGCAAGCCTTTGGGGCGAAGAAGTACTACATGATGGGGGTTTATCTTCAACGTTCATGGATTGTTCTTTCAATGTGTTGTGTTCTTGTCTTGCCGATTCTTCTATTTGCTTCACCAATCTTGAAGCTTATGGGTCAGCCTTCAGATTTAGCAGAGCTATCAGGTGCTGTTGCCTTGTGGATGATTCCACTTCATTTCAGCTTCGCATTTCAATTCCCTCTTTGGAGGTTTTTGCAGTGCCAGCTGAAACCTGGAGTTATTGCTTGGGCTTCTCTATTGGCACTGGTTGTGCACGTATTTGTGAGTTGGTTGTTTGTGTACAAGTTTCAAGTTGGAGTGATTGGAACCGCCGCCACCATGAATATATCTTGGTGGGTTTTGGATTTAGGGCTTATATTTTACTGTGTTTGTGGAGGTTGTCCTCTCACCTGGTCTGGTTTCTCCATGGAAGCTTTCTCTGGTTTATGGGAATTCGTGAAACTATCTGCATATTCTGGTGTCATGCTCTGCTTGGAGAACTGGTACTACAGAATACTGATATTGATGACTGGGAATCTTGATAATGCCAAGATTGCGGTGGATGCGTTATCCATATGCATGGCCATAAATGGATGGGAAATGATGGTTCCTCTTTCATTCTTTGCTGCAACTGGAGTGAGGGTGGCGAATGAGCTGGGAGCTGGGAATGGGAAAGGAGCCAAGTTTGCAACAATGGTGTCAGTGGTGACGTCAACCATAATAGGAGTGGTCATATGTGTCTTCATCATGGTGTTTCATAATCAGATTGGCTATTTGTTCTCTTCTAGTAAACCCGTGCTTGATCAAGTCAACAGCCTCTCTCTCCTCTTGGTTTTCACCATACTTCTCAACAGTGTCCAACCAGTTCTCTCTGGTGTAGCTGTGGGGTCCGGGTGGCAGTCCTACGTGGCCTACATAAACTTGGGTTGCTATTATATCATTGGTTTGCCTCTTGGGATTCTGATGGGCTGGGTCTTCCATCAAGGAGTCATGGGTATCTGGGCAGGGATGATTTTTGGGGGAACAGCAACTCAGACCTTATTATTGGCCCTTATCACCATTCGTTGCAATTGGGACAGAGAGGCTGAGAAAGCAAACTTGCACATCAGGAAGTTGGAAGATCAAATATGA 1929 0.4536 MGRTRNRPITNDKLGCGEDCHSTRAASVGNREEEKRFFGGGVCDSLVYALNWFYTGILGLANKKTITIQPASKDQSVLLATTKTKKQNKPASLLHKSVMKKEFRMMAMAVGNQGICVLSFSSKAWLNACENLDPQRITPINKTIRCLLQRSDSDFTEMATTTKEAASASAPSSESKVPLLEHVQEDLARRVWVESKKLWHIVGPAIFSRITSYAILVITQAFAGHLGDLELAAISIVTNVILGFDIGLLLGMASALETLCGQAFGAKKYYMMGVYLQRSWIVLSMCCVLVLPILLFASPILKLMGQPSDLAELSGAVALWMIPLHFSFAFQFPLWRFLQCQLKPGVIAWASLLALVVHVFVSWLFVYKFQVGVIGTAATMNISWWVLDLGLIFYCVCGGCPLTWSGFSMEAFSGLWEFVKLSAYSGVMLCLENWYYRILILMTGNLDNAKIAVDALSICMAINGWEMMVPLSFFAATGVRVANELGAGNGKGAKFATMVSVVTSTIIGVVICVFIMVFHNQIGYLFSSSKPVLDQVNSLSLLLVFTILLNSVQPVLSGVAVGSGWQSYVAYINLGCYYIIGLPLGILMGWVFHQGVMGIWAGMIFGGTATQTLLLALITIRCNWDREAEKANLHIRKLEDQI 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1072 642 PANTHER MULTIDRUG RESISTANCE PROTEIN 187 624 - -
Lele50g1072 642 CDD MATE_eukaryotic 194 630 IPR045069 GO:0042910|GO:1990961
Lele50g1072 642 Gene3D - 56 114 - -
Lele50g1072 642 TIGRFAM matE: MATE efflux family protein 204 600 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele50g1072 642 Pfam MatE 204 364 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Lele50g1072 642 Pfam MatE 427 586 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1072 Lele-ChrLele50 6912356 6922125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1072 59 113 Cytoplasmic Ribosomal Protein Gene Family AT2G19730 69.091 2.81e-18 80.1