Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1068 ATGCGTGCGCTCAGGAACGCCCTGATATTGACTCGCAGGGTTTCAGTGTTCGTCATCGGCGTTTGGTGGAGCGCGTATGTGTATGCACATGATCTCTCTGTCTCTCTCTTCTTTCTGTTCGCCTTTTCAAATTTTTTTCCCTGGCGTTCGTCTTCAGCTCACGTTCCTCTCTGCTTCTGCTACTGTACCAGTACAAACCAAATACTAACAACTACTGCACTGGGATTTCGCTTTCAAGTGTGGATTCATTTGAATTCCACGACGGATACGGAGGTGGAGGTGGAGGTGGAGGAGGATATGGATTTTGAGGAGCAAGAGGAGGAGCTCGGGATGGGGCCCTCCGGGAGTTACGACTCCATGGGGAACCCGACCCGAGTGAAAATGGCGAGCGGCGGAGAAGTCATGGTGGTCCAGGCTGCGAGAAATAGTAACAATAAGGCGAGGTATAGGGAGTGCTTAAAGAACCACGCCGTGAGCATCGGAGGCCACGCTCTCGACGGCTGCGGCGAGTTTCTCCCAGCCGGAGCGGAAGGCACTATGGACGCACTCAAATGTGCAGCCTGTAACTGCCACCGGAATTTCCACCGCAAAGAAACGGACACGATTGGTATCGGAGTCGGGGACCCATATTTGTTAACCAACCACCCGCACCTCCACCAGCACCAACCGCCTCAGTTCTCGCCGTATTACCGAACAGCGCCGGCGGGGTATCTGCCCGTGGGAGGACAACACAGGGGCCCGGCAACGCTGGCGCTGCCGTCGACGTCTGGAGCAGGGTGTGGGATCCAGAGTTTAAGGGACGATCAAGAGGACGTTTCGAATCCGAGTGCACTCGGAGGGATGGACGGGTCGAAAAAAAGGTTCAGGACGAAGTTCACGCTGGAACAAAAGGACAAAATGCTGGCTTTGGCTGAGAAACTGGGTTGGAGGATTCAGAAGCACGACGAGGCGGAGGTCCAAGAGTTCTGTAACGAGACGGGTGTGAAGCGTCACGTTCTCAAGGTTTGGATGCATAACAACAAGCACACTCTCGGTAAGAAGCCCTAG 1047 0.5463 MRALRNALILTRRVSVFVIGVWWSAYVYAHDLSVSLFFLFAFSNFFPWRSSSAHVPLCFCYCTSTNQILTTTALGFRFQVWIHLNSTTDTEVEVEVEEDMDFEEQEEELGMGPSGSYDSMGNPTRVKMASGGEVMVVQAARNSNNKARYRECLKNHAVSIGGHALDGCGEFLPAGAEGTMDALKCAACNCHRNFHRKETDTIGIGVGDPYLLTNHPHLHQHQPPQFSPYYRTAPAGYLPVGGQHRGPATLALPSTSGAGCGIQSLRDDQEDVSNPSALGGMDGSKKRFRTKFTLEQKDKMLALAEKLGWRIQKHDEAEVQEFCNETGVKRHVLKVWMHNNKHTLGKKP 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1068 348 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 149 198 IPR006456 -
Lele50g1068 348 SUPERFAMILY Homeodomain-like 279 346 IPR009057 -
Lele50g1068 348 Gene3D - 272 345 - -
Lele50g1068 348 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 285 341 IPR006455 -
Lele50g1068 348 Pfam ZF-HD protein dimerisation region 147 199 IPR006456 -
Lele50g1068 348 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 148 198 IPR006456 -
Lele50g1068 348 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 139 344 - -
Lele50g1068 348 FunFam Zinc-finger homeodomain protein 2 272 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1068 Lele-ChrLele50 6860208 6861555 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1068 100 344 ZF-HD Transcription Factor Family AT4G24660 48.387 4.10e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele50g1068 ZF-HD_dimer 1.9e-29 No_clan