Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1057 ATGCCTGCAGATTTTCCTCAGTGTGGGATTCTTCTTTTGCTTCATTTCGTTCATTGTCTCGTATCGGAGAGGATTCAGATTAAGAAGATCGACAACGCTACGGCAAGGCAAGTGACGTTCTCCAAGCGACGCAGAGGGCTCTTCAAAAAAGCTGAGGAGCTTTCTGTCCTCTGTGATGCGGATGTTGGCCTCATCGTCTTCTCCACAACTGGGAAGCTCTTTGAGTACTCCAGCACAAGCATGAAGGAAATACTCGACAGGTATCATTTGCTCTCGAAGAACCTATCGAAACAAGAACTATCGTCTCTTGAATTGCAGCTAGTTGAGAACAGTAACACCAGCTTGAGCAAGGAAGTTGCTGAGAAGACCCGTCAACTAAGGCGGATGAGAGGAGAAGATCTGCAAGGTTTAAATATCGAGGAATTGCAGCAACTAGAGAGGTCTCTCGAATCTGGATTGGGCCGTGTAATAGAAAAGAAGGAAGAGAAGATAATGACTGAGATAAGTGATCTCAAGAGAAAGGGAGTGGAGTTGATGGAAGAGAACGAGATGTTAAAGCGTCAAGTGGAACAATTATGTGATGGCAATAGGCATGGTGGTGCCGAGTCCGAAATCCTAAACAACGAGGAAGGTCAGTCATCAGAATCTGTCACTATCGTCTGCAACTCCATGGGACCCCCGCAAGACTACGACAGCTCAGACACATCGCTCAAGCTTGGGTGA 723 0.4661 MPADFPQCGILLLLHFVHCLVSERIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVGLIVFSTTGKLFEYSSTSMKEILDRYHLLSKNLSKQELSSLELQLVENSNTSLSKEVAEKTRQLRRMRGEDLQGLNIEELQQLERSLESGLGRVIEKKEEKIMTEISDLKRKGVELMEENEMLKRQVEQLCDGNRHGGAESEILNNEEGQSSESVTIVCNSMGPPQDYDSSDTSLKLG 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1057 240 MobiDBLite consensus disorder prediction 206 240 - -
Lele50g1057 240 PRINTS MADS domain signature 57 78 IPR002100 GO:0003677|GO:0046983
Lele50g1057 240 PRINTS MADS domain signature 42 57 IPR002100 GO:0003677|GO:0046983
Lele50g1057 240 PRINTS MADS domain signature 22 42 IPR002100 GO:0003677|GO:0046983
Lele50g1057 240 FunFam Transcription factor, MADS-box 32 102 - -
Lele50g1057 240 Coils Coil 105 132 - -
Lele50g1057 240 ProSiteProfiles MADS-box domain profile. 20 80 IPR002100 GO:0003677|GO:0046983
Lele50g1057 240 SMART madsneu2 20 79 IPR002100 GO:0003677|GO:0046983
Lele50g1057 240 ProSitePatterns MADS-box domain signature. 22 76 IPR002100 GO:0003677|GO:0046983
Lele50g1057 240 MobiDBLite consensus disorder prediction 196 240 - -
Lele50g1057 240 Gene3D - 32 115 IPR036879 GO:0003677|GO:0046983
Lele50g1057 240 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 29 76 IPR002100 GO:0003677|GO:0046983
Lele50g1057 240 CDD MADS_MEF2_like 24 94 IPR033896 GO:0000977|GO:0045944
Lele50g1057 240 ProSiteProfiles K-box domain profile. 105 195 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele50g1057 240 Coils Coil 168 188 - -
Lele50g1057 240 Pfam K-box region 110 189 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lele50g1057 240 PANTHER SERUM RESPONSE FACTOR HOMOLOG 24 200 - -
Lele50g1057 240 SUPERFAMILY SRF-like 24 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1057 Lele-ChrLele50 6788793 6793216 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1057 20 240 MADS-box Gene Family AT2G22540 63.830 2.85e-96 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lele50g1057 K-box 2e-16 No_clan