Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1053 ATGATGGCTCTTCCTGGTTCTCTGCAGTTGTCCCGTGTATTGGGACCTTGTAGGAACCAGAATTACAATAAACAACCTTTGCTCCTGAAACAAGAATGCTGGAGACTTCGACTCCCTTGCAAAATAAACAAGCCAATACATGCCTTATCTTGCAAATCCCAGTCTTTCAAGTGTCATTCTTTTCTAGGAGCTGGCCGACCAAGTGAACTACCTGTTGTTAAGGTGGCTGCCACAGCACTGGCAAGGTCCTTTAATGTTTTACAAGGTAATCCTGTTATAGCAAAGTTAATTCCAGCACTTGGTGTAATCACATTCGCTATATGGGGTGTCAGCCCATTACTATTTCTAACAAGAAAACTGTTCCTTCAGAAGGATAGCAATTGGAAGAAAAGCAGCACAAAGTATATAGGAACTTCTTATCTTCGGCCAATATTGTTATGGATTGGAGCTATACTTGTGTGCAGAGCTTTGGAGTCAATAGTTCTACCTACGGAAACAAGCCAGATTGTTAAGGGAAGGCTTTTGAATTTTGTAAGATCGTTGTCAACTGTCCTTTCATTCGCGTATTGTTTATCAAGTGTGATTCAACAAGCTCAGAGATTCTTTGTTCAGAGTGCTGATGCCAACGAGGCAAGAAATATGGGATTCCAATTTGCTGGCAATGCTGTGTACTCTGCAGTATGGATTGCCGCCTTTTCATTGTTCATGGAATTGCTGGGTTTCTCTACCAAGAAATGGCTTACTGCAGGAGGTCTTGGGACAGTTTTGCTTACTCTTGCTGGTCGTGAGATATTTACAAACTTCCTTTCAAGCTTGATGATTCACGCAACCAGACCTTTTGTGACGAAAGAATGGATTCAAACAAGAATTGAAGGATATGAAGTTTCTGGTCATGTAGAGCATGTTGGCTGGTGGTCACCAACAATCATAAGAGGTGAAGATCGTGAGGCTGTTCATGTTCCAAACCACAAATTTACAATGAGTGTCGTGAGAAACCTTAGTCAGAAAACACATTGGAGGATCAAAACCTACTTATGCATCAGTCATTTGGATGTCGGCAAGATTAATAATATTGTTGCTGACATGCGGAAAGTCTTAGCCAAAAATCCTCAAGTAGAGCAGCAGCGGCTGCACAGGAGAGTGTTTCTGGAAGATATAAATCATGAAAATCAAGCTCTTATGATACTGGTGTCTTGTTTTGTCAAGACCTCACGTCATGAAGAGTATTTTCGTGTCAAGGAAATTATACTATTAGATCTTCTTAGAGTCATTGGTCATCATGGGGCTCGACTTGCAACACCAGTTCGTACTCTGCAGAGGAGATATAGTGATGATGACTTAGAGAACATACCCTGTGCAGATTCTTTTGTTGGTGGTGCTAGACCTGCACATAAACGTCCATTATTATTGATTGAGCCACCTTACAAAATCAACTCTGATGATAAAACAAGAAGCAACAGAACACAAACCAAACAATCTGCAAAAACTGATGCCAAGGGGGGATCATCAGTGGTTCCAGATTCCAATGTTAAAGAAACTCCTTCAAACTCGAAGTCAGGTACCAAAGATGTGAATGGAAAACCCAAAAATGCCACGTCATCGATAGTTCATCCTGAAGATGATCCACTGAAACCAGATTCGAATACTACGGGAAATATTGGGTTGCCAGATATTCCTGCTTCCAATTCCAAAGCAAATTTAATCCAGGACTTGAACAACCTTAAGCAGAAAACTGACTCTGACAATACAATGTTGGCTTCGGCTTCAAGTAATGCTGACATGTCACGTGAGCATCCTTTGGATAAACCATCAAAAGAGCAAGACGAAAGGAAACCAGCTGAACAGCCTCCTGCTACATCTCGGACTGATGTTGAAGAGAATATAGTCCTTGGTGTTGCGTTGGATGGATCAAAGAGAACCCTTCCCATTGATTGTTGA 1938 0.4143 MMALPGSLQLSRVLGPCRNQNYNKQPLLLKQECWRLRLPCKINKPIHALSCKSQSFKCHSFLGAGRPSELPVVKVAATALARSFNVLQGNPVIAKLIPALGVITFAIWGVSPLLFLTRKLFLQKDSNWKKSSTKYIGTSYLRPILLWIGAILVCRALESIVLPTETSQIVKGRLLNFVRSLSTVLSFAYCLSSVIQQAQRFFVQSADANEARNMGFQFAGNAVYSAVWIAAFSLFMELLGFSTKKWLTAGGLGTVLLTLAGREIFTNFLSSLMIHATRPFVTKEWIQTRIEGYEVSGHVEHVGWWSPTIIRGEDREAVHVPNHKFTMSVVRNLSQKTHWRIKTYLCISHLDVGKINNIVADMRKVLAKNPQVEQQRLHRRVFLEDINHENQALMILVSCFVKTSRHEEYFRVKEIILLDLLRVIGHHGARLATPVRTLQRRYSDDDLENIPCADSFVGGARPAHKRPLLLIEPPYKINSDDKTRSNRTQTKQSAKTDAKGGSSVVPDSNVKETPSNSKSGTKDVNGKPKNATSSIVHPEDDPLKPDSNTTGNIGLPDIPASNSKANLIQDLNNLKQKTDSDNTMLASASSNADMSREHPLDKPSKEQDERKPAEQPPATSRTDVEENIVLGVALDGSKRTLPIDC 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1053 645 MobiDBLite consensus disorder prediction 595 616 - -
Lele50g1053 645 SUPERFAMILY Sm-like ribonucleoproteins 264 334 IPR010920 -
Lele50g1053 645 MobiDBLite consensus disorder prediction 545 562 - -
Lele50g1053 645 MobiDBLite consensus disorder prediction 489 532 - -
Lele50g1053 645 MobiDBLite consensus disorder prediction 471 562 - -
Lele50g1053 645 MobiDBLite consensus disorder prediction 574 594 - -
Lele50g1053 645 MobiDBLite consensus disorder prediction 574 626 - -
Lele50g1053 645 Pfam Mechanosensitive ion channel 222 430 IPR006685 GO:0016020|GO:0055085
Lele50g1053 645 Gene3D - 176 278 - -
Lele50g1053 645 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 6 644 IPR045042 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1053 Lele-ChrLele50 6753406 6758768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1053 10 644 Mechanosensitive Ion Channel Family AT5G10490 53.740 0.0 667