LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g1046	ATGGATTCCACCACCCAAACAGGGAAGATATTTGTTGCTGTTAGTAATGATCTTCAAGATGGAATCAAGACCTTGAATTGGGCTCTCAATAAATGGAAATCTTATCCTATTTCCATTGTTATTCTCTATGTAAGTCACAATACTTCCCAGGATCATGTGAATACCCCGTTTGGGAAACTCCCAGCAAAATCGGTGAATGATGAGATGCTTCCAGCTCTCAGGAAACAAGAGCAAGACAAAATCGACAAACTTCTCTCCAAGTACATAGCTTTCTGTGGAAAGGTACCAGCTGAAATACTTGAAGTCGATAAATGTGATGAATCTATCCAAAAACGCATCTTAGACATGATTATTGGTGTAGAAATAACCAAACTCGTCATTGGATTTTCAGTGATGAAGCCCTCCTGGAAATCACGAGGGGCCATAAGCGGATTGTTCTATATTCATCAGCATAAGCCAGAATTCTGCGAACTGTTCACCTTATGTGGAGGGAAACAAGTATTCATGAGAGGACATAACGATGAAAAGATCATGGAGGACGATAATGGGGTTGTGGTTGCCAGAATCAGAGACAAGATAACATTCAAAGATTGGTTAGAGAAAATGTTGCCTGACAGAAACAACAACATGGATTCCCCAGATTATTCAAGAAGCCCTCTTGGATCAGCAACTTGTTCTTCAGCATCCTCAGCTTCACAGAACCAGTGGGAAATCTATCTCCAAGAGATTGAAACATATTTCCAGGATTTGTTATGTTCTAACACGAATAATGATGAACAAATTAGACTTGAGCATCAAGACAGTGACGTCTCGGGGATTAGTGGAATTGAGCCAGATGACGATGATGATGTCAGGGAACAGAACAATTCTAATAAGAAACCAAAAGAAAGAATTGAGATGCTGAAAGGAAAATTGGAAGAGGCACGTAGGATGATCCAACTGAAGAGGAAAGAAGCTAAGGATCAAAGTGATAGACATGCAAAAGCTGAATGGGCTATTGGTTTATGCAACACTCGGGCTCAAGAACTTGAAGGCAAAATCAAGGAAGAGATGAACATGAAGGAGGAGTTAGCAAAAGAATTAGAAGCAGAAAGAGAAACCATATATGAAACCAGACGTGACATTGAAGAGAGCAGAAAAAGGTTAAGCTCACTGTTGGAGCTTCAATTGGAGCTCTCAAACAAGCTTCAGATCTCCACACAGGCAAGATCACAAGCCGAAATCCAATTGGAGAATGCGGCGAATACCAGATCGGAGATGGTGGCCAACATCGACCAGCTTCGGAGACAAAGAGACGTGCTTTACAGAAGGATTGAGTTTTGCAAAGATAAGGACGCCATAGGAATGGCTGCCAGGCTGAGCGAACCGGTTTTCAGTTTCAGAGAGTACACCACGGAGGAGATCAGGTTGGCCACCGATGACTTCTCCGACCGCCTCATGTTGAAGTCCGGTGGTGCCTACTCCACCGATGTTTATAGAGGAAAGATCAATCATTCCACTGTAGCCATCAAGATGCTCACTTCCAGTCATGCCTTGTCCCCACAAGAATTCCAAGCTAAGGTGAGACTTCTTGTGGGTATGCGACATCCTCACGTGGTGGCTACGGTGGGCTACTGCACTAAGCTAAGATGCATAGTTCTGGAATATATGAATAATGGTAGCTTGAGGGACATGTTGTTTTCTAAGAGAAGAAACCGGGCCTTACGGTGGCAACACCGAATCAGAATAGCCACTGAAGTTGGTTCGGCCTTGGGCTTTCTTCATTCGGCCCAACCCATGCCCTTCATTCACGGCCACCTAACTCCTTCGAGTATCCTTCTGGATCGCAATCTTGTTGCAAAGATCAAAGGTTTCAGGTCCAACGAAGGCAACCCACAATCCGACGTACATTCCTTTGGAGTTTTGATCATGCATCTCCTAACAGGAAGAAACTGGGTGGGCCTAGTTGAGGAGGAAGTGGTGATGATGGGCGAATCTTTGGTCAGGGTTCTAGATGAGACCTCCGGGCCATGGCCATTGAATGTGGCCCAAAAACTAGCCGAGCTAGCAGGGAAATGTATGGGCTTTTCCAATGGGCGAAAGCCCAAGGAAGGATTAAGTATTGAGAATGTAATGGCGGAACTAAATGAGATCAGAAGAGAGGCGAACGAGGAAGGTGAAAGAGGAGACAACACTACGAGATTGAGTGGAGGAGGTGTAGATAAAGAAGAGATGATGGATGTGCCAAAGGTGTTTCTTTGTCCCATACTTCAGGAAGTGATGAAGAACCCACACGTGGCAGGGGATGGATTTTCATATGAATTAGAAGCAATAGAAGAATGGGTTGGTTCAGGGCATGATAGATCCCCCATTACAAACGAAAGGCTGCCTCACTTGTTCTTTACCCCTAATCACTCCCTTCGTTCCTTAATTAGGGACTGGCAAACCAAAAGATCCTCTGATTTTGCAAAGTAG	2454	0.4421	MDSTTQTGKIFVAVSNDLQDGIKTLNWALNKWKSYPISIVILYVSHNTSQDHVNTPFGKLPAKSVNDEMLPALRKQEQDKIDKLLSKYIAFCGKVPAEILEVDKCDESIQKRILDMIIGVEITKLVIGFSVMKPSWKSRGAISGLFYIHQHKPEFCELFTLCGGKQVFMRGHNDEKIMEDDNGVVVARIRDKITFKDWLEKMLPDRNNNMDSPDYSRSPLGSATCSSASSASQNQWEIYLQEIETYFQDLLCSNTNNDEQIRLEHQDSDVSGISGIEPDDDDDVREQNNSNKKPKERIEMLKGKLEEARRMIQLKRKEAKDQSDRHAKAEWAIGLCNTRAQELEGKIKEEMNMKEELAKELEAERETIYETRRDIEESRKRLSSLLELQLELSNKLQISTQARSQAEIQLENAANTRSEMVANIDQLRRQRDVLYRRIEFCKDKDAIGMAARLSEPVFSFREYTTEEIRLATDDFSDRLMLKSGGAYSTDVYRGKINHSTVAIKMLTSSHALSPQEFQAKVRLLVGMRHPHVVATVGYCTKLRCIVLEYMNNGSLRDMLFSKRRNRALRWQHRIRIATEVGSALGFLHSAQPMPFIHGHLTPSSILLDRNLVAKIKGFRSNEGNPQSDVHSFGVLIMHLLTGRNWVGLVEEEVVMMGESLVRVLDETSGPWPLNVAQKLAELAGKCMGFSNGRKPKEGLSIENVMAELNEIRREANEEGERGDNTTRLSGGGVDKEEMMDVPKVFLCPILQEVMKNPHVAGDGFSYELEAIEEWVGSGHDRSPITNERLPHLFFTPNHSLRSLIRDWQTKRSSDFAK	817

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g1046	817	CDD	RING-Ubox_WDSUB1_like	745	786	-	-
	Lele50g1046	817	Pfam	U-box domain	741	811	IPR003613	GO:0004842\|GO:0016567
	Lele50g1046	817	SUPERFAMILY	RING/U-box	735	812	-	-
	Lele50g1046	817	Pfam	Protein tyrosine and serine/threonine kinase	489	618	IPR001245	GO:0004672\|GO:0006468
	Lele50g1046	817	SUPERFAMILY	Protein kinase-like (PK-like)	456	707	IPR011009	-
	Lele50g1046	817	Coils	Coil	298	325	-	-
	Lele50g1046	817	Coils	Coil	340	378	-	-
	Lele50g1046	817	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	739	816	IPR013083	-
	Lele50g1046	817	ProSiteProfiles	U-box domain profile.	740	814	IPR003613	GO:0004842\|GO:0016567
	Lele50g1046	817	Gene3D	Phosphorylase Kinase; domain 1	451	549	-	-
	Lele50g1046	817	PANTHER	OS02G0152300 PROTEIN	10	618	-	-
	Lele50g1046	817	Gene3D	Transferase(Phosphotransferase) domain 1	620	730	-	-
	Lele50g1046	817	MobiDBLite	consensus disorder prediction	264	296	-	-
	Lele50g1046	817	SMART	Ubox_2	744	807	IPR003613	GO:0004842\|GO:0016567
	Lele50g1046	817	Coils	Coil	410	444	-	-
	Lele50g1046	817	Gene3D	Transferase(Phosphotransferase) domain 1	550	619	-	-
	Lele50g1046	817	Coils	Coil	701	721	-	-
	Lele50g1046	817	MobiDBLite	consensus disorder prediction	715	734	-	-
	Lele50g1046	817	ProSiteProfiles	Protein kinase domain profile.	477	794	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g1046	Lele-ChrLele50	6719117	6723794	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele50g1046	2	813	U-box Gene Family	AT5G65500	45.576	0.0	686

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-IXb	Lele50g1046		PK_Tyr_Ser-Thr	4.2e-19	CL0016

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele50g1046	50	6719117	6723794	Lele51g0985	51	6219248	6222923	hybridization
	Lele50g1046	50	6719117	6723794	Lele52g1011	52	6674687	6681329	hybridization