LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele50g1045	ATGGCTCGCGCTACAAACTGGTTGTCATTTTCGTTGTCGCCGATGGAAATGCTGAGGTCCTCCGATTCTCAGTTCGTCCAATACGACAATCTCTCTGCGAACAATTCCTCTCACTACTACTTCGTCGACAATTTCGATGCCAATGGTGTAACGCCACGTTGGGGGGCGAATCTGAAGTCGCAAGCAGATTACTATGGCCAAGTAGAGCAAAACCCGGTGGGGGAGAGCTTGGCGGGCGCACAAATTCAGAACGGCGGAGTGCCGAAGCTGGAAGATTTTCTGGGCTACTCCGATAGCCAAACGGAGACGCAAGATTCGTCGCTGACGCATATTTACGAGCAGGGAGGCGGCGGCGGCGGCTACTTTGGCGATCCGCAAGATCTGAAAGCAATCGCCGGGTTTCAAGCTTTCTCTGCTAACTCCGGCTCAGAGGTGGTAGACTCAGCGTCCATCGCAAAGACTGCTCATCATCAGGCTGCTAGTGTGGAGTTCGCGATCGAGTCGTCCGGGAACAACGTGGCGTTCTCCGGTTGTGCCACTGGCGCTTTGTCCCTCGGCGTCGCACAAAGTCGGGAGAAATCCATTGTTGCAGTGGACTCGGATAGCCCGAAGAAAGTCGCCGATACTTTTGGTCAGCGAACTTCAATCTACAGAGGCGTTACAAGACACCGATGGACGGGAAGATATGAAGCACATCTATGGGATAACAGTTGTCGTAGAGAAGGTCAGGCGAGAAAAGGACGTCAAGGTGGATATGACAAAGAAGACAAGGCTGCGAGAGCTTATGATTTGGCTGCTCTAAAGTATTGGGGTCCAACTGCGACCACCAACTTTCCTGTTTCGAATTACGCAAAGGAATTGGAAGAGATGAAACATGTCACAAAGCAAGAATTCATTGCTTCACTGAGAAGGAAAAGTAGCGGTTTCTCTAGAGGAGCTTCTATATACAGAGGCGTAACGAGGCATCATCAGCAAGGTCGATGGCAAGCGAGAATTGGTCGTGTTGCAGGAAACAAAGATCTATACCTTGGAACATTTGCTACTGAAGAGGAAGCAGCAGAGGCATATGATATTGCGGCCATTAAATTCAGAGGTGCAGGTGCGGTGACGAACTTTGAGATGAACAGATATGATGTGGAAGCTATTATGAAGAGTACTCTTCCTGTTGGTGGATCAGCCAAACGCGCAAAACATTCCCCAGATTCTGAACACAATATTGCTCTTCCTACAAATATCCAGCAACCGCAATATCCAAACGCGATTTATCCCAACGATGGAACTATCAGTTTCACTCCCATTCAACCTGCACTCGCTTCTTCTATCCCTTGTGCCATTCCCTATGATTCTGCTGCAGCACATTACCAACCCAATTTCTTGCACCATTTTTATCCTACTAGCAGCTCTGCAACTGTGGATTCCGCCGTATCTGTGACCGCCGCTCCAATGACTGCTCTGCCGGCCGCCGCTGCTGAGTTTTTTCTGTGGCCTCATCAGCCATGTTGA	1503	0.4977	MARATNWLSFSLSPMEMLRSSDSQFVQYDNLSANNSSHYYFVDNFDANGVTPRWGANLKSQADYYGQVEQNPVGESLAGAQIQNGGVPKLEDFLGYSDSQTETQDSSLTHIYEQGGGGGGYFGDPQDLKAIAGFQAFSANSGSEVVDSASIAKTAHHQAASVEFAIESSGNNVAFSGCATGALSLGVAQSREKSIVAVDSDSPKKVADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQGGYDKEDKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGAGAVTNFEMNRYDVEAIMKSTLPVGGSAKRAKHSPDSEHNIALPTNIQQPQYPNAIYPNDGTISFTPIQPALASSIPCAIPYDSAAAHYQPNFLHHFYPTSSSATVDSAVSVTAAPMTALPAAAAEFFLWPHQPC	500

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele50g1045	500	ProSiteProfiles	AP2/ERF domain profile.	216	279	IPR001471	GO:0003700\|GO:0006355
	Lele50g1045	500	FunFam	AP2-like ethylene-responsive transcription factor ANT	215	281	-	-
	Lele50g1045	500	PRINTS	Ethylene responsive element binding protein signature	217	228	IPR001471	GO:0003700\|GO:0006355
	Lele50g1045	500	PRINTS	Ethylene responsive element binding protein signature	355	375	IPR001471	GO:0003700\|GO:0006355
	Lele50g1045	500	SMART	rav1_2	216	285	IPR001471	GO:0003700\|GO:0006355
	Lele50g1045	500	SMART	rav1_2	315	379	IPR001471	GO:0003700\|GO:0006355
	Lele50g1045	500	Pfam	AP2 domain	216	271	IPR001471	GO:0003700\|GO:0006355
	Lele50g1045	500	Pfam	AP2 domain	315	365	IPR001471	GO:0003700\|GO:0006355
	Lele50g1045	500	Gene3D	AP2/ERF domain	315	375	IPR036955	GO:0003700\|GO:0006355
	Lele50g1045	500	Gene3D	AP2/ERF domain	216	281	IPR036955	GO:0003700\|GO:0006355
	Lele50g1045	500	ProSiteProfiles	AP2/ERF domain profile.	315	373	IPR001471	GO:0003700\|GO:0006355
	Lele50g1045	500	CDD	AP2	314	373	IPR001471	GO:0003700\|GO:0006355
	Lele50g1045	500	SUPERFAMILY	DNA-binding domain	314	374	IPR016177	GO:0003677
	Lele50g1045	500	FunFam	AP2-like ethylene-responsive transcription factor	314	375	-	-
	Lele50g1045	500	SUPERFAMILY	DNA-binding domain	215	281	IPR016177	GO:0003677
	Lele50g1045	500	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	87	407	-	-
	Lele50g1045	500	CDD	AP2	215	281	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele50g1045	Lele-ChrLele50	6706960	6710228	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele50g1045	87	498	AP2-EREBP Transcription Factor Family	AT5G10510	55.781	2.84e-152	444

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Lele50g1045		AP2	1.1e-08	CL0081