Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1020 ATGTCAGCTCCGGCGACAACGACGAAAGACGAGAGCCAGGGCTCAGGCGGCGGCCGGAAAAGCACCTCGGTAACGGTGGGGAGGCAGTTAGAGCAAGGGCTAAAGTGCCCGAGATGTGACTCGCCCAACACTAAATTCTGTTACTATAATAATTACAGCCTGACTCAGCCGAGGCATTTCTGCAAGACGTGTCGTAGATACTGGACAAAAGGCGGAGCCTTGCGTAACGTTCCGATTGGCGGCGGTTGCCGGAAGAACAAGAAACTGAAATCTTCATCATCATCCTCAAGACTCTCAAATGACGGTGGTTTTTCCCCTTCTCTGGATTTTCACCTCGGTGGTGGCACCGCCGCCGCTAGCTTCTTACCCTTCCCTAGGCTCAACGATCATCATCATCATCCTCCAGCTTTCAACCTTGAAGGAACCTCGAGTTCTTTCAATATTGGATTCAATAATTACCCACTTAACGGTGGTGTAATTCAAGGCATGAGCTCAATGAACATTCAGAGTAGCCTTGCTTCTTCGATTGAGTCTCTGAGCTCAATAAACCAAGACCTGCACTGGAAACTGCAACAGCAGAGACTAGCTATGCTGTTTGGAGGGGATGGTACGGGTCTTAAAGATAACCGACCCGTTTCAGCGAGTAATCTCGAGAACCAGAGTCTTCATCATCATCAGAAATCAGTACCACAACCTATTTTGTTTCAGAATCTTGAGATTTCGAAGCCTGAAGAGATCTGTCCGGTGGTCGGAAGCTCGAGAAGAGATACACCCACAGAATGGTTCTTCGGTAGCTCGTATGCTTCAGTGACTCCAACACCAACAACTACAAGCAGTGGCGGTGCTGGTGGAGGAGGTAATGGGAATGATAATAATGGAAGCAGTAACTGGAGTCTTCAGGCTGGTTGGGGTGATGTGCAGCAGCAATACAGTGCTTTGCCCTAG 945 0.491 MSAPATTTKDESQGSGGGRKSTSVTVGRQLEQGLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKLKSSSSSSRLSNDGGFSPSLDFHLGGGTAAASFLPFPRLNDHHHHPPAFNLEGTSSSFNIGFNNYPLNGGVIQGMSSMNIQSSLASSIESLSSINQDLHWKLQQQRLAMLFGGDGTGLKDNRPVSASNLENQSLHHHQKSVPQPILFQNLEISKPEEICPVVGSSRRDTPTEWFFGSSYASVTPTPTTTSSGGAGGGGNGNDNNGSSNWSLQAGWGDVQQQYSALP 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1020 314 ProSiteProfiles Zinc finger Dof-type profile. 34 88 IPR003851 GO:0003677|GO:0006355
Lele50g1020 314 Pfam Dof domain, zinc finger 32 88 IPR003851 GO:0003677|GO:0006355
Lele50g1020 314 MobiDBLite consensus disorder prediction 265 314 - -
Lele50g1020 314 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 23 200 IPR045174 GO:0003700|GO:0006355
Lele50g1020 314 MobiDBLite consensus disorder prediction 1 26 - -
Lele50g1020 314 ProSitePatterns Zinc finger Dof-type signature. 36 72 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1020 Lele-ChrLele50 6507524 6508468 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1020 14 314 C2C2-Dof Transcription Factor Family AT5G65590 39.763 4.98e-57 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lele50g1020 zf-Dof 8.6e-33 No_clan