Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1003 ATGAAGGAATTGGATAACCGGAGCTTAAGACTTGTTATGGTTCATATCCTTTGCCTTCTTCTGTTGATCAGATCAGCGTTTGCAAGTGAAGGTTTTGTGAGCATAGCATGCTGTGCTGATTCAGACTATACAGATCCAAAAACTTCGGTAAATTACGCATCAGATTTTAGTTTCTACCCAGATAAAGCAAGTTGCTTAGACACAATTAAGCCTGTGAAGAACCATGCAGGCCATGGAAAAGCAAGAGTGTTTGATATAGATAAAGGAAAAAGATGTTACAGCTTGCCAACAATTAAGAATAAAGTGTATCTGCTAAGGGGCACATTTCCATCTGATAAATCTCTAAGTGAATCTCCGAATTCCTCTTTTGATGTTACAATTGGGGTTGCCTTATTAGGTAGGGTAGAGAAACCACCTCAGGATGTGGAATTACTTGAAGGAATTTTCAGAGCTACAAAGAATTACACAGATTTCTGCTTGGGGAAGGATGAAGGAGGAAGTCCCTATGTTTCATTGATCGAACTGAGGCCGTTGGATGAAGAGTACCTACAGGATTATTCCCCTTCTAGTGTCCTAAAAGTGATCACAAGAAATAACCTAGGGGCCACCGGAGATGACATCAGGTACCCACTTGACCGAAGTGACAGAATCTGGAAAGCTACTTCAAGTTCGTCATTTTCTTCCACATCATTGGATGAAAACATTTCCAACCACAATGCTAACTCGACACCTCCTCTACAAGTCTTACGAACCGCTCTTATGCATTCTGAGCGATTGGAATTCATCAACAATGGCCTCGACCCTGGGAATTCCGAATACCGTGTGATTCTCCACTTTCTTGAATTGAACAAGAGTGTCGGAGTAGGCAAAAGGGTGTTTGATATCTACGTCAATGGTGTCATTAAGGAGACCAAGTTTGACATATTTTCTGGTGGATCGAACTACAGACAAGCTGTTTTGAACTTGTCGGTAAATGGTTCGCTGAATCTAACCTTGAGCCAGGCTTCTGGTTCTGAGAATGGACCGCTCTGTAATGCATACGAGATCCTGAAGGTTATCCCTTGGATGCAGGAAACCAACCGAACGGACTCTGAAGTGATGTTGAAGGTGAGAGAGCAATTTTTAGAGAATAACAGAGGAAATAAAGAACTGGAGAGTTGGAGTGGAGACCCCTGCATTCTGTCTCCATGGCAGCATGTAGGATGTGATCGTTTAAGTGGTCAACTTGTTATTACTAAACTGGATCTTTCTTCAAGTAATCTCCGAGGACCAATTCCTTCCAGTATCACTGAGTTGTCCAACTTAAAAATACTGAACCTGAGCTACAATAGCTTAAATGGGAATATCCCCTCATTTCTACCTTCATCTTTGCTTACATCAATAGATCTGAGCCACAATGATCTCACAGGATGGCTTCCATGGACCCTTCCCTTACTGCCAAACCTAAAGTCTTTGTACTTCGGCTGCAATAAGCGTATGAGCAAGGAGATTCCAACTTCCTTGAACAGCTTAGAAAATACAGATTATGGAAGTTGCAAACCTGGAGACCCAGGAATTTCACAAAAGCAAATCGCCATTGGCACTGTTACATGTGGATTTGTCCTGACCATTTTGGCTGCTGGAATTCTTTGTAGCTGCCCTAGAAGAGGAAAAATAGGGAAAACATCTGATGAAAAGGGATACCCAGCAACCACAAATTTAATTTTCTCTTTAACCAGTAAAGATGATTTCTTCGTAAAGCCAGTATCAATTCAAACATTCACCCTGGAATACGTAGAGGCAGCCACCCAAAACTACAGAACCTTGATTGGTGAAGGAGGCTTTGGTTCTGTTTACCGTGGCACTCTAGATGATGGCCAAGAAGTAGCAGTGAAGGTCCGTTCAGCCACATCAACTCAGGGAACTCGCGAATTCGACAACGAGGTAAACTTGCTCTCTGCTATACGGCATGAGAACTTGGTGCCTCTTATTGGTTACTGTTGTGAAAAGGATCAACAAATTCTGGTGTATCCTTTTATGGCTAATGGTTCTTTACAAGATAGGCTGTATGGGGAACCTGCAAAGAGAAAACCATTAGACTGGCCAACCAGGTTATCTATTGCTCTCGGTTTGTCATATCTTCATACGTTTTCGGGACGTTCTGTTATACATAGAGATGTCAAATCGAGCAACATACTTCTGGATCACAGCATGTGTGCCAAGGTAGCAGACTTTGGTTTCTCAAAATATGCTCCTCAGGAAGGAGACAGTTGTGCTTCTCTTGAAGTGAGAGGAACTGCAGGATACATGGACCCTGAGTACTATACAACCCAGCAATTATCTGCAAAGAGTGATGTCTTCAGCTTTGGCATGGTTCTACTTGAAATTCTGACTGGCCGGGAACCTCTCAGCACGCGAAGACCGCGGGATGAGTGGAACTTGGTGGAATGGGCTAAACCGTACATAAGGGCGTCGAAGATCGATGAAATTGTGGACCCTACCATCAAGGGAGGATATCATGCAGAGGCCATGTGGAGAGTAGTGGAAACAGCACTAACATGTATTGAACCATTCTCAGTGCATCGTCCAATCATGGCTGATATAGTTCGCGAGTTGGAGGATGCTCTGATTATAGAAAACAATGCATCAGAGTACATGAAGTCCATAGAAAGCCTTGGAGGATCAAATCGCTATTCCATTGTGATGGAGAAGAAGATGGCAGCCCCATCTCCATCTACACCAGAATCAACCGTCACGCCCAAAACCATGTCTCACCCGCAGCCCAGATAG 2769 0.433 MKELDNRSLRLVMVHILCLLLLIRSAFASEGFVSIACCADSDYTDPKTSVNYASDFSFYPDKASCLDTIKPVKNHAGHGKARVFDIDKGKRCYSLPTIKNKVYLLRGTFPSDKSLSESPNSSFDVTIGVALLGRVEKPPQDVELLEGIFRATKNYTDFCLGKDEGGSPYVSLIELRPLDEEYLQDYSPSSVLKVITRNNLGATGDDIRYPLDRSDRIWKATSSSSFSSTSLDENISNHNANSTPPLQVLRTALMHSERLEFINNGLDPGNSEYRVILHFLELNKSVGVGKRVFDIYVNGVIKETKFDIFSGGSNYRQAVLNLSVNGSLNLTLSQASGSENGPLCNAYEILKVIPWMQETNRTDSEVMLKVREQFLENNRGNKELESWSGDPCILSPWQHVGCDRLSGQLVITKLDLSSSNLRGPIPSSITELSNLKILNLSYNSLNGNIPSFLPSSLLTSIDLSHNDLTGWLPWTLPLLPNLKSLYFGCNKRMSKEIPTSLNSLENTDYGSCKPGDPGISQKQIAIGTVTCGFVLTILAAGILCSCPRRGKIGKTSDEKGYPATTNLIFSLTSKDDFFVKPVSIQTFTLEYVEAATQNYRTLIGEGGFGSVYRGTLDDGQEVAVKVRSATSTQGTREFDNEVNLLSAIRHENLVPLIGYCCEKDQQILVYPFMANGSLQDRLYGEPAKRKPLDWPTRLSIALGLSYLHTFSGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSCASLEVRGTAGYMDPEYYTTQQLSAKSDVFSFGMVLLEILTGREPLSTRRPRDEWNLVEWAKPYIRASKIDEIVDPTIKGGYHAEAMWRVVETALTCIEPFSVHRPIMADIVRELEDALIIENNASEYMKSIESLGGSNRYSIVMEKKMAAPSPSTPESTVTPKTMSHPQPR 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1003 922 ProSiteProfiles Protein kinase domain profile. 597 870 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1003 922 SUPERFAMILY L domain-like 386 505 - -
Lele50g1003 922 ProSitePatterns Protein kinases ATP-binding region signature. 603 625 IPR017441 GO:0005524
Lele50g1003 922 Pfam Malectin-like domain 40 352 IPR024788 -
Lele50g1003 922 CDD STKc_IRAK 603 866 - -
Lele50g1003 922 FunFam Leucine-rich repeat receptor-like kinase 363 475 - -
Lele50g1003 922 MobiDBLite consensus disorder prediction 898 922 - -
Lele50g1003 922 Gene3D - 193 352 - -
Lele50g1003 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 715 727 IPR008271 GO:0004672|GO:0006468
Lele50g1003 922 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 673 878 - -
Lele50g1003 922 Pfam Leucine rich repeat 412 468 IPR001611 GO:0005515
Lele50g1003 922 SUPERFAMILY Protein kinase-like (PK-like) 577 865 IPR011009 -
Lele50g1003 922 Pfam Protein tyrosine and serine/threonine kinase 601 809 IPR001245 GO:0004672|GO:0006468
Lele50g1003 922 PANTHER OS07G0107800 PROTEIN-RELATED 33 872 - -
Lele50g1003 922 Gene3D Transferase(Phosphotransferase) domain 1 673 885 - -
Lele50g1003 922 MobiDBLite consensus disorder prediction 903 922 - -
Lele50g1003 922 Gene3D Phosphorylase Kinase; domain 1 569 672 - -
Lele50g1003 922 Gene3D Ribonuclease Inhibitor 359 513 IPR032675 -
Lele50g1003 922 SMART serkin_6 599 857 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele50g1003 922 FunFam Nodulation receptor kinase 562 672 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1003 Lele-ChrLele50 6396700 6402342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1003 9 872 Receptor kinase-like Gene Family AT1G67720 34.778 4.19e-140 439
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Lele50g1003 Malectin_like 2.1e-47 CL0202
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g1003 50 6396700 6402342 Lele51g0958 51 6044827 6051608 hybridization
Lele50g1003 50 6396700 6402342 Lele52g0980 52 6445866 6451491 hybridization