Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g1002 ATGGATTTTTCAACCTCGGAAGCATCAGCTAAAAGCAACCTTCCGGCTTCCTCAAGTCGTTTTCTCACTTTCTTCCTTGCTTTTAATCCTTCATCATCCCTTGTTCCCTCAGTTTTAGGAGCCATAATCAAAATCCTCTGTTTCTATTATCAGATCATAATCATGGCTCGTCATCAACCCAATAATATTCCCCGTCCTGATTATCATCATCATCATCAACAACAACATCATCAAGAGGCTGTGATTGACATAAAGAGGCCAGTGAACTTCACCGGAGGGCTTGAGTTTTCAGGGCTGACCTACACGGTGACAAAGAAGAAGAAGGTTGATGAAAGCTGGGTGAAGGAGAACGTGGACTTGCTTCATAACATTACTGGGTATGCACCAAAGGGTTGTGTCACTGCAGTGATGGGTCCTAGTGGTGCAGGCAAGTCTACGTTCTTGGACGGTCTTGCTGGTAGAATTGCGAGTGGGAGTCTTAAGGGAAGGGTGTGTTTGGATGGCACAGATACTAACCCTACTTTGATCAAAAGAACTTCTGCTTATGTCATGCAGGACGATAGGCTCTTCCCAATGCTCACTGTTTATGAAACTTTCATGTTTGCTGCTGATTTTCGACTTGGTCCACTTTCTGTTGTTGAAAAGAAGCAGAGAGTAGAGAAGCTCATTGAGCAGCTCGGCTTATCATCAACTCGAAACACGTACATCGGAGACGAAGGTACAAGAGGAGTATCTGGAGGAGAGAGACGTCGAGTGTCGATCGGCGCCGACATCATCCATGGACCATCCCTTCTATTTCTCGACGAGCCGACTTCTGGTCTGGACTCCACCAGCGCTCACAGCGTCATCGAGAAGGTCCACGACATTGCTCGCGGCGGCAGCACCGTCATCCTCACCATCCACCAGCCTTCCTCCAGAATCCTCGCCCTTCTCGACCACCTCATCATCCTCGCCCGAGGCCAGCTCATGTTTCAGGGCTCCCCCAAAGCCGTCTCTCTCCATCTGGGTCGCATGGGACGCAAAGTCCCCAAGGGAGAGAATCCAATCGAACACCTCGTTGATGTGATTCAAGAATATGATCTGTGTAATGTTGGGGTCGGAGCTCTCGCTGAGTTTGCCCGCACCGGAGTTAAACCCCCTCCTTTGCCTGACCAGGAATTCTCCCTCTCCACCGTCGCTCCGTCAACCCCAGGCCGAAAACCTCGCTTTGAGGATCGTTCCGCCGTCGACTATTTTGATCACAGTGTGAGAAGCATGAGAAGCCCTCGTACACCCCATAGTGGATTGTTTCACAAGTTAACACCTTCCCGCTTCAAGAACGAACACAGACTACAGAATAATCATTTAAGTAGTAATGCTTCGCCGGGGTACTACACGTACTCGAGCGATATCCTGCCGGCGACGCCGACGCCTCATAGCAGCGACTACACTGTGAATGAGAATGACTACCTGACTCCACCAGATGGCGTTCCGAAGCATCTGGGTCCGAAATTTGCGAACTCGTTCTTGGCGGAGACGTGGATTCTGATGCGGCGGAACTTCACAAACATCCGGCGAACTCCTGAGCTTTTTCTCTCCAGATTGATGGTGCTCACGGTGATGGGAATCATGATGGCCACCATGTTCAAGAGCCCTAAACAAGACGTGCAAGGGATCACCAACCGCCTCAGTTTCTTCATCTTCACCGTCTGTCTCTTCTTCTTCTCCTCCAACGATGCCGTGCCGGCGTTCATCCAAGAGCGATTCATTTTCATCAGGGAAACTTCTCACAACGCCTATCGAGCTTCGTCCTACACCATCGCCGGCATAATCACTCACACACCATTTCTTGTTCTGCAAGCTTCCGTCTACGCCATCATCGTCTGGTTCGCTTTGAAGCTCGAAGGCCCTTTTCTGTACTTCGTGTTGGTTCTCTTCGTTTCCCTTCTCTCCACAAACTCGTTCGTTGTTTTCGTGAGTTCAGTGGTTCCAAACTATATCCTCGGTTATGCCGCCGTCATCGCTTTCACTGCTTTGTTCTTCTTGTTCTGTGGTTACTTCTTGAGTAGCAAGGACATTCCAATTTATTGGCGTTGGATGAACAAGATTTCGACGATGACTTATCCCTATGAAGGGCTTTTGATCAACCAGTATCGGAACTCGAATGTGTTTGGATTGAACCTGGACGGGACAGATATTACAGGTTTCGATATATTGAACAGTCTTCATATAAGTACTGATTCGTTTAGGAAGTGGGAAAATGTGATTATAATGTTGTTCTGGGCCGTCCTATATAGGATTTTCTTTTACCTTGTCCTTCGTTTTGCTTCCAAAAACCAGAGGTCGTAG 2328 0.485 MDFSTSEASAKSNLPASSSRFLTFFLAFNPSSSLVPSVLGAIIKILCFYYQIIIMARHQPNNIPRPDYHHHHQQQHHQEAVIDIKRPVNFTGGLEFSGLTYTVTKKKKVDESWVKENVDLLHNITGYAPKGCVTAVMGPSGAGKSTFLDGLAGRIASGSLKGRVCLDGTDTNPTLIKRTSAYVMQDDRLFPMLTVYETFMFAADFRLGPLSVVEKKQRVEKLIEQLGLSSTRNTYIGDEGTRGVSGGERRRVSIGADIIHGPSLLFLDEPTSGLDSTSAHSVIEKVHDIARGGSTVILTIHQPSSRILALLDHLIILARGQLMFQGSPKAVSLHLGRMGRKVPKGENPIEHLVDVIQEYDLCNVGVGALAEFARTGVKPPPLPDQEFSLSTVAPSTPGRKPRFEDRSAVDYFDHSVRSMRSPRTPHSGLFHKLTPSRFKNEHRLQNNHLSSNASPGYYTYSSDILPATPTPHSSDYTVNENDYLTPPDGVPKHLGPKFANSFLAETWILMRRNFTNIRRTPELFLSRLMVLTVMGIMMATMFKSPKQDVQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASSYTIAGIITHTPFLVLQASVYAIIVWFALKLEGPFLYFVLVLFVSLLSTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSKDIPIYWRWMNKISTMTYPYEGLLINQYRNSNVFGLNLDGTDITGFDILNSLHISTDSFRKWENVIIMLFWAVLYRIFFYLVLRFASKNQRS 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g1002 775 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 76 762 - -
Lele50g1002 775 FunFam ABC transporter G family member 6 104 342 - -
Lele50g1002 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 332 IPR027417 -
Lele50g1002 775 Pfam ABC-2 type transporter 506 711 IPR013525 GO:0016020|GO:0140359
Lele50g1002 775 Pfam ABC transporter 121 272 IPR003439 GO:0005524
Lele50g1002 775 Pfam ABC-2 type transporter 301 357 IPR043926 GO:0140359
Lele50g1002 775 Gene3D - 94 355 IPR027417 -
Lele50g1002 775 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 94 344 IPR003439 GO:0005524
Lele50g1002 775 CDD ABCG_EPDR 94 326 - -
Lele50g1002 775 ProSitePatterns ABC transporters family signature. 244 258 IPR017871 GO:0005524|GO:0016887
Lele50g1002 775 SMART AAA_5 130 321 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g1002 Lele-ChrLele50 6390042 6393452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g1002 81 411 Calmodulin-binding Proteins AT2G36910 25.588 5.38e-12 67.8