Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0999 ATGGAGCTTACTCAACTCGGTTTTCTGGAGGAACTTCTAGCTCCAAGAAGAAACACTTGGAGCACTTTTTCCTCTGGTTTGGGCGAGATATTCCCCAACAATGATTGGAGTTTTGATTCTTTTGAAGATAACCCGCCTTTAGCTCCTTTGAATCCTCCCTTTCCTCCATTTTCCACGCCACTAGACCCTAGATTTGAGTGTCCATACACTAATGAAGCAGCAGCATACCCATTTGTTGATGGCTTCACAGTATCAGAGCTTGACTTTTCATACGCCAGGAATGAAGATTCTGCACTGTTTCCTGCACAAGAAAGTAACCCATCAATGGAGGATGAAGACTTTGGCTTTCTGGGGAGTGAAAATCAGAGCCTTGAAGAGATGAACACGGTCTGCAAAATTGAGGAACAAGCCACAGAAGTTCCAGTAGTCTTCAACATGGGTTTGTGTGGGGAGAAAAAACCGAAGTCCAAGAAGCTTGAAGGGCAGCCCTCCAAGAATCTAATGGCAGAAAGAAGGAGAAGAAAGCGCCTCAATGACCGCCTTTCCATGCTAAGGTCAATAGTTCCAAAGATCAGCAAGATGGACAGGACCTCTATTCTTGGAGACACCATAGATTACATGAAAGAGCTTCTAGAAAGGATCGGTAAGCTGCAAGAAGAAAGAACGGAAGAGGGTGTAAATCAGATAAACCTCTTCGGTAAATCGAAAGAGATGAAGCCAAATGAAGTTATGGTAAGAAATTTACCCAAGTTTGAGGTTGAGAAGAGAGACCGGGACACAAAAGTCAGTATCTGTTGTGGCACAAGGGCTGGATTGTTGCTATCCACTGTGAACACCCTTGAAGCATTAGGCCTTGAGATTCAACAATGTGTTATAAGCAGCTTCAATGATTTTTCAATGCAAGCATCTTGCTCAGAGGTAGCCGAGCAGAGAAATGGAATTAGCTCTGAAGAGATAAAGCAAGCACTATTCAGAAATGCCGGTTATGGTGGGAGATGTCTATAG 1005 0.4368 MELTQLGFLEELLAPRRNTWSTFSSGLGEIFPNNDWSFDSFEDNPPLAPLNPPFPPFSTPLDPRFECPYTNEAAAYPFVDGFTVSELDFSYARNEDSALFPAQESNPSMEDEDFGFLGSENQSLEEMNTVCKIEEQATEVPVVFNMGLCGEKKPKSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEERTEEGVNQINLFGKSKEMKPNEVMVRNLPKFEVEKRDRDTKVSICCGTRAGLLLSTVNTLEALGLEIQQCVISSFNDFSMQASCSEVAEQRNGISSEEIKQALFRNAGYGGRCL 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0999 334 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 80 328 - -
Lele50g0999 334 SMART finulus 167 216 IPR011598 GO:0046983
Lele50g0999 334 Gene3D - 150 211 IPR036638 GO:0046983
Lele50g0999 334 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 164 224 IPR036638 GO:0046983
Lele50g0999 334 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 161 210 IPR011598 GO:0046983
Lele50g0999 334 Pfam Helix-loop-helix DNA-binding domain 167 210 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0999 Lele-ChrLele50 6365352 6366636 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0999 152 334 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.306 5.59e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele50g0999 HLH 7.1e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0999 50 6365352 6366636 Lele51g0954 51 6015090 6016349 hybridization
Lele50g0999 50 6365352 6366636 Lele52g0976 52 6414881 6416192 hybridization