Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0994 ATGTGTCCGCCGCTGCTGGTTGCTGAGGAGGAAGGGCAGAGCAATATTTCAACAGTAGCATCTTCACCGTCCTTGGACTCTATCTCCCACAATGGAACGGCATTAAAAGAGCGCAATTACCTCGGATTATCAGATTGTTCATCATCAGTTGACAGTTCTAGTGTCCCGAGCAAGTCAGGTGAGAAAAAGGACAATATGAATTTGAAGGCTACAGAGTTGAGGTTGGGCCTTCCCGGATTCCAGTCTCCTGAAAGGGATTCAGATCTTTGTGCATCAAACTCAACAAAGCTTGATGAGAAACAGCTATTTCCTTTGCTTCCTACAAGAGATGGAATCTGTTCATCATCCCAGAAAACTGTGGTTTCAGGAAACAAGAGAGGTTTCTCTGACACCATGAAGGGTTTCCCAGAGGGGAATTTTACTGGTAATTCAGGGATAAATGTAATGTTACCTAGATCTTCTGGAGCACAGCCAACCTTTATGAAAGAAATATCCTCTAAAGTTTCACAGGAACGGCCTCCTGCAACCAATGGACTTGGTCATAATCAGACGGGTACTCCTGCTAAAAGCAGTGCGCCAGCTGCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATATAGGAAGAATTCATTGGCTAATACTTCGAAGAACAATGATGAAGTTGATGGAAAACCTGGTCCTGCTGCTCTGTTTGTGAAGGTGAGCATGGATGGGGCTCCTTATCTAAGGAAGGTAGATCTAAGGAATTATACAACATATCAAGAACTGTCTTCTGCCCTCGAGAAGATGTTCAGCTGTTTTACCTTAGGTCAATGTGGTTCTCATGGTGCTCCAGGCAGAGAAATGTTAAGTGAGAGCAAGTTGAGGGATCTTTTACATGGTTCTGAGTACGTTCTCACTTATGAAGATAAAGATGGTGATTGGATGCTTGTAGGGGATGTACCATGGGGGATGTTCATTGACACATGCAAGAGGCTGAAAATTATGAAGGGTTCTGATGCCATTGGCTTGGCTCCCAGAGCTATGGAAAAATCCAGGAGCAGGAGCTAG 1056 0.4441 MCPPLLVAEEEGQSNISTVASSPSLDSISHNGTALKERNYLGLSDCSSSVDSSSVPSKSGEKKDNMNLKATELRLGLPGFQSPERDSDLCASNSTKLDEKQLFPLLPTRDGICSSSQKTVVSGNKRGFSDTMKGFPEGNFTGNSGINVMLPRSSGAQPTFMKEISSKVSQERPPATNGLGHNQTGTPAKSSAPAAKAQVVGWPPIRSYRKNSLANTSKNNDEVDGKPGPAALFVKVSMDGAPYLRKVDLRNYTTYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWGMFIDTCKRLKIMKGSDAIGLAPRAMEKSRSRS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0994 351 FunFam Auxin-responsive protein 226 343 - -
Lele50g0994 351 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 338 IPR003311 GO:0005634|GO:0006355
Lele50g0994 351 ProSiteProfiles PB1 domain profile. 231 335 IPR000270 GO:0005515
Lele50g0994 351 MobiDBLite consensus disorder prediction 45 61 - -
Lele50g0994 351 MobiDBLite consensus disorder prediction 166 191 - -
Lele50g0994 351 MobiDBLite consensus disorder prediction 166 196 - -
Lele50g0994 351 MobiDBLite consensus disorder prediction 45 65 - -
Lele50g0994 351 SUPERFAMILY CAD & PB1 domains 229 332 - -
Lele50g0994 351 Pfam AUX/IAA family 71 342 IPR033389 -
Lele50g0994 351 Gene3D - 228 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0994 Lele-ChrLele50 6328817 6331724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0994 235 341 B3 DNA Binding Superfamily AT4G23980 29.907 1.49e-07 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lele50g0994 AUX_IAA 3.9e-91 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0994 50 6328817 6331724 Lele50g0994 50 6328817 6331724 ECH
Lele50g0994 50 6328817 6331724 Lele51g0951 51 5981934 5985116 hybridization
Lele50g0994 50 6328817 6331724 Lele52g0972 52 6375321 6378536 hybridization